cluster # 323

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Oryza sativa
cluster # 323 cluster # 323 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_323#0 length = 1987 sequences # 1

consensus_323#1 length = 380 sequences # 1

consensusID : consensus_323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1987
fasta sequence

                              [CCTCCCTTTCCTCCCCCAATTCTCCATTTCTCCTAGCTCGCCGGAAACCCTAAGCGGGCCACCTCGCGCCGCGGCGGGCCGGCGAGCGATCGCATTGGGCGGCGGCGGCGATGGCGACCCACGCCCCCAAGGGCTACCTCTGCGCGGGGAGCTCGTCGTTCGATGATCCCGACGTGGTCGAGGTGACGCCGGCGGCGGCCGCGGCAGGGGGGTGGAGCTCCGGCCACCAGAAGCGGAAGCGGAGTCAGGTTGTTCCTCATGAAGTAATTGAACTGGATGCTGATGATGATCCTGATGGAGTTGTGATTATTGGTGAAAAATCATCAGTTGATAAGAATAAGCAAGCTGTTGGATATCCTATAGACTGGCTAAAGCATGCAAAGAGTAGTTTGGCTGGTGGAATTGCTGGCCCAAGTTCCTACCCATCAAAAAATCCTGATATATTACTTGGTGGCCTGAAAATATTTCAAGAGAACCCATTTTACAACAACATTGATGACTATGCTTATGAGGCATTTGAAGAAGATTATGGTTATGATGAAGATGAGTATGATGATTACGATTATGATAGTACACTTTATGAAAGTGAATATAACTTCACTTTGGCTTCCAAGTTTGATGGTTTGGATATCCCACCTGGTGTGGAGGCTCCTTTACCATGGTTGCAGACGACTGCGTCAGAGATGGCAAATAAGACCAAACCTGTGAACATGATGGATGATAAAATTGATGAAAAATACAGTGCATTTAAGCAATTCGATACTGTTGATGATCACAGTGATCATTATTATTCGAAGCCAGATTTAAGAAAGGTTCAGGTAGTGAAAAAGCCTTCAAAAGAATGGGCAAAGCGTATTCAGCACGAGTGGAAAGTTCTAGAAAAAGATTTACCAGATACCATATTCGTGAGGGCATATGAGGATAGAATGGACCTGCTTAGAGCTGTTATTACGGGACCAGCAGGCACTCCCTATCATGATGGTCTCTTCTTCTTTGACATTTACTTCCCTCCTCATTATCCGAGTGTACCTCCACTGGTGAACTATCGGTCTGGTGGGTTGCGGCTTAATCCAAACTTGTATGCTTGCGGGAAGGTGTGCCTTAGCCTGTTGAACACCTGGTCTGGTAGTGGATGTGAGAGGTGGAGTCCTTCAAACTCAACAATGCTACAAGTCCTGGTCTCAGTTCAGGCTTTGGTGTTGAATGCCAAACCTTATTTCAATGAGCCTGGATATGCCATGCATGCTAATACACCTCATGGCGAGAAGAGTTCATTAACTTATAATGAAGATACTTTCCTGCTATCCTGCAGGACAATGCTATATTCTCTGCGAAATCCACCAAAGCATTTTGAGGATTTTATCGCCGGTCATTTCCGCAAGTATGGCCAGAGCATCCTGATAGCTTGCAGAGCCTATCTGGACGGTGCCCAAGTTGGATGTCTTGTTGGAAATGGTGTGCAGGATGTCGATGAGGGCGACAAGAGCTGCTCGGCGAGGTTTAAGAGCGCGCTGAAGAGATTATTTGAGGAACTTCTGATGGAATTCACTGTCAAGGGAGCAGAGTGTGACAAATTCCTAGCTGAGAAGGCCAAAGCCGCGGCTTCTAGAGCTCCAGCAGACACCACATTGAGGCTATAAGTTGATAGCCTCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTATTGAAATAGGATCCTCAACTCATTATGCCCCCGGATTCTAACCGTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGTTGCCCCGGTAAACATAAACGACATATCCGTGTTTGTATTTAGGGGCTATATATCTTTTTTCCCCATAGCATGAGGGTGTCGTCTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTCTGAAGAATATCATATTGAACTCTTATCAGCAGATCCCTGCTTCTACGCTGGAATTCAGCTAGAATGCTAGATTATCAGTT]

[+] EMBL AK121717             [CCTCCCTTTCCTCCCCCAATTCTCCATTTCTCCTAGCTCGCCGGAAACCCTAAGCGGGCCACCTCGCGCCGCGGCGGGCCGGCGAGCGATCGCATTGGGCGGCGGCGGCGATGGCGACCCACGCCCCCAAGGGCTACCTCTGCGCGGGGAGCTCGTCGTTCGATGATCCCGACGTGGTCGAGGTGACGCCGGCGGCGGCCGCGGCAGGGGGGTGGAGCTCCGGCCACCAGAAGCGGAAGCGGAGTCAGGTTGTTCCTCATGAAGTAATTGAACTGGATGCTGATGATGATCCTGATGGAGTTGTGATTATTGGTGAAAAATCATCAGTTGATAAGAATAAGCAAGCTGTTGGATATCCTATAGACTGGCTAAAGCATGCAAAGAGTAGTTTGGCTGGTGGAATTGCTGGCCCAAGTTCCTACCCATCAAAAAATCCTGATATATTACTTGGTGGCCTGAAAATATTTCAAGAGAACCCATTTTACAACAACATTGATGACTATGCTTATGAGGCATTTGAAGAAGATTATGGTTATGATGAAGATGAGTATGATGATTACGATTATGATAGTACACTTTATGAAAGTGAATATAACTTCACTTTGGCTTCCAAGTTTGATGGTTTGGATATCCCACCTGGTGTGGAGGCTCCTTTACCATGGTTGCAGACGACTGCGTCAGAGATGGCAAATAAGACCAAACCTGTGAACATGATGGATGATAAAATTGATGAAAAATACAGTGCATTTAAGCAATTCGATACTGTTGATGATCACAGTGATCATTATTATTCGAAGCCAGATTTAAGAAAGGTTCAGGTAGTGAAAAAGCCTTCAAAAGAATGGGCAAAGCGTATTCAGCACGAGTGGAAAGTTCTAGAAAAAGATTTACCAGATACCATATTCGTGAGGGCATATGAGGATAGAATGGACCTGCTTAGAGCTGTTATTACGGGACCAGCAGGCACTCCCTATCATGATGGTCTCTTCTTCTTTGACATTTACTTCCCTCCTCATTATCCGAGTGTACCTCCACTGGTGAACTATCGGTCTGGTGGGTTGCGGCTTAATCCAAACTTGTATGCTTGCGGGAAGGTGTGCCTTAGCCTGTTGAACACCTGGTCTGGTAGTGGATGTGAGAGGTGGAGTCCTTCAAACTCAACAATGCTACAAGTCCTGGTCTCAGTTCAGGCTTTGGTGTTGAATGCCAAACCTTATTTCAATGAGCCTGGATATGCCATGCATGCTAATACACCTCATGGCGAGAAGAGTTCATTAACTTATAATGAAGATACTTTCCTGCTATCCTGCAGGACAATGCTATATTCTCTGCGAAATCCACCAAAGCATTTTGAGGATTTTATCGCCGGTCATTTCCGCAAGTATGGCCAGAGCATCCTGATAGCTTGCAGAGCCTATCTGGACGGTGCCCAAGTTGGATGTCTTGTTGGAAATGGTGTGCAGGATGTCGATGAGGGCGACAAGAGCTGCTCGGCGAGGTTTAAGAGCGCGCTGAAGAGATTATTTGAGGAACTTCTGATGGAATTCACTGTCAAGGGAGCAGAGTGTGACAAATTCCTAGCTGAGAAGGCCAAAGCCGCGGCTTCTAGAGCTCCAGCAGACACCACATTGAGGCTATAAGTTGATAGCCTCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTATTGAAATAGGATCCTCAACTCATTATGCCCCCGGATTCTAACCGTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGTTGCCCCGGTAAACATAAACGACATATCCGTGTTTGTATTTAGGGGCTATATATCTTTTTTCCCCATAGCATGAGGGTGTCGTCTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTCTGAAGAATATCATATTGAACTCTTATCAGCAGATCCCTGCTTCTACGCTGGAATTCAGCTAGAATGCTAGATTATCAGTT]




>consensus_323#0
CCTCCCTTTCCTCCCCCAATTCTCCATTTCTCCTAGCTCGCCGGAAACCCTAAGCGGGCC
ACCTCGCGCCGCGGCGGGCCGGCGAGCGATCGCATTGGGCGGCGGCGGCGATGGCGACCC
ACGCCCCCAAGGGCTACCTCTGCGCGGGGAGCTCGTCGTTCGATGATCCCGACGTGGTCG
AGGTGACGCCGGCGGCGGCCGCGGCAGGGGGGTGGAGCTCCGGCCACCAGAAGCGGAAGC
GGAGTCAGGTTGTTCCTCATGAAGTAATTGAACTGGATGCTGATGATGATCCTGATGGAG
TTGTGATTATTGGTGAAAAATCATCAGTTGATAAGAATAAGCAAGCTGTTGGATATCCTA
TAGACTGGCTAAAGCATGCAAAGAGTAGTTTGGCTGGTGGAATTGCTGGCCCAAGTTCCT
ACCCATCAAAAAATCCTGATATATTACTTGGTGGCCTGAAAATATTTCAAGAGAACCCAT
TTTACAACAACATTGATGACTATGCTTATGAGGCATTTGAAGAAGATTATGGTTATGATG
AAGATGAGTATGATGATTACGATTATGATAGTACACTTTATGAAAGTGAATATAACTTCA
CTTTGGCTTCCAAGTTTGATGGTTTGGATATCCCACCTGGTGTGGAGGCTCCTTTACCAT
GGTTGCAGACGACTGCGTCAGAGATGGCAAATAAGACCAAACCTGTGAACATGATGGATG
ATAAAATTGATGAAAAATACAGTGCATTTAAGCAATTCGATACTGTTGATGATCACAGTG
ATCATTATTATTCGAAGCCAGATTTAAGAAAGGTTCAGGTAGTGAAAAAGCCTTCAAAAG
AATGGGCAAAGCGTATTCAGCACGAGTGGAAAGTTCTAGAAAAAGATTTACCAGATACCA
TATTCGTGAGGGCATATGAGGATAGAATGGACCTGCTTAGAGCTGTTATTACGGGACCAG
CAGGCACTCCCTATCATGATGGTCTCTTCTTCTTTGACATTTACTTCCCTCCTCATTATC
CGAGTGTACCTCCACTGGTGAACTATCGGTCTGGTGGGTTGCGGCTTAATCCAAACTTGT
ATGCTTGCGGGAAGGTGTGCCTTAGCCTGTTGAACACCTGGTCTGGTAGTGGATGTGAGA
GGTGGAGTCCTTCAAACTCAACAATGCTACAAGTCCTGGTCTCAGTTCAGGCTTTGGTGT
TGAATGCCAAACCTTATTTCAATGAGCCTGGATATGCCATGCATGCTAATACACCTCATG
GCGAGAAGAGTTCATTAACTTATAATGAAGATACTTTCCTGCTATCCTGCAGGACAATGC
TATATTCTCTGCGAAATCCACCAAAGCATTTTGAGGATTTTATCGCCGGTCATTTCCGCA
AGTATGGCCAGAGCATCCTGATAGCTTGCAGAGCCTATCTGGACGGTGCCCAAGTTGGAT
GTCTTGTTGGAAATGGTGTGCAGGATGTCGATGAGGGCGACAAGAGCTGCTCGGCGAGGT
TTAAGAGCGCGCTGAAGAGATTATTTGAGGAACTTCTGATGGAATTCACTGTCAAGGGAG
CAGAGTGTGACAAATTCCTAGCTGAGAAGGCCAAAGCCGCGGCTTCTAGAGCTCCAGCAG
ACACCACATTGAGGCTATAAGTTGATAGCCTCGCGTGGTCGATAGACGGGAGTAATAATT
TCGCTATTGAAATAGGATCCTCAACTCATTATGCCCCCGGATTCTAACCGTTTCCTGGAA
GTAGCCTATGTAAATAGCCTTGTAGTTGCCCCGGTAAACATAAACGACATATCCGTGTTT
GTATTTAGGGGCTATATATCTTTTTTCCCCATAGCATGAGGGTGTCGTCTACCTGCGGAG
CCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTCTGAAGAATATCAT
ATTGAACTCTTATCAGCAGATCCCTGCTTCTACGCTGGAATTCAGCTAGAATGCTAGATT
ATCAGTT

consensusID : consensus_323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [CNTATCTGAGTAAGGCCTAATGCCGCGGCTNTTCTAGAGCTCCATGCTAGACTACCACCTTGAGGCTATAATGNTGATANCCTGCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTATTGTAAATAGGATCCTCAACTCATTATGCCCCGCGGATTNTAACCGTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGGTGCCCCGGTAAACATAATACGACANATCCGTGNTTGTAGTTTAGGGGCTATACATCTTTNTTCCCCATAGCATGAGGGTGTTGTTTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTTCTGAAGAATATCATATTGAACTTTTTAAAAAAAAAA]

[+] EMBL BI805718             [CNTATCTGAGTAAGGCCTAATGCCGCGGCTNTTCTAGAGCTCCATGCTAGACTACCACCTTGAGGCTATAATGNTGATANCCTGCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTATTGTAAATAGGATCCTCAACTCATTATGCCCCGCGGATTNTAACCGTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGGTGCCCCGGTAAACATAATACGACANATCCGTGNTTGTAGTTTAGGGGCTATACATCTTTNTTCCCCATAGCATGAGGGTGTTGTTTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTTCTGAAGAATATCATATTGAACTTTTTAAAAAAAAAA]




>consensus_323#1
CNTATCTGAGTAAGGCCTAATGCCGCGGCTNTTCTAGAGCTCCATGCTAGACTACCACCT
TGAGGCTATAATGNTGATANCCTGCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTAT
TGTAAATAGGATCCTCAACTCATTATGCCCCGCGGATTNTAACCGTTTCCTGGAAGTAGC
CTATGTAAATAGCCTTGTAGGTGCCCCGGTAAACATAATACGACANATCCGTGNTTGTAG
TTTAGGGGCTATACATCTTTNTTCCCCATAGCATGAGGGTGTTGTTTACCTGCGGAGCCT
TAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTTCTGAAGAATATCATAT
TGAACTTTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_323#0      CCTCCCTTTCCTCCCCCAATTCTCCATTTCTCCTAGCTCGCCGGAAACCCTAAGCGGGCC 60
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ACCTCGCGCCGCGGCGGGCCGGCGAGCGATCGCATTGGGCGGCGGCGGCGATGGCGACCC 120
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ACGCCCCCAAGGGCTACCTCTGCGCGGGGAGCTCGTCGTTCGATGATCCCGACGTGGTCG 180
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      AGGTGACGCCGGCGGCGGCCGCGGCAGGGGGGTGGAGCTCCGGCCACCAGAAGCGGAAGC 240
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      GGAGTCAGGTTGTTCCTCATGAAGTAATTGAACTGGATGCTGATGATGATCCTGATGGAG 300
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TTGTGATTATTGGTGAAAAATCATCAGTTGATAAGAATAAGCAAGCTGTTGGATATCCTA 360
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TAGACTGGCTAAAGCATGCAAAGAGTAGTTTGGCTGGTGGAATTGCTGGCCCAAGTTCCT 420
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ACCCATCAAAAAATCCTGATATATTACTTGGTGGCCTGAAAATATTTCAAGAGAACCCAT 480
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TTTACAACAACATTGATGACTATGCTTATGAGGCATTTGAAGAAGATTATGGTTATGATG 540
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      AAGATGAGTATGATGATTACGATTATGATAGTACACTTTATGAAAGTGAATATAACTTCA 600
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      CTTTGGCTTCCAAGTTTGATGGTTTGGATATCCCACCTGGTGTGGAGGCTCCTTTACCAT 660
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      GGTTGCAGACGACTGCGTCAGAGATGGCAAATAAGACCAAACCTGTGAACATGATGGATG 720
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ATAAAATTGATGAAAAATACAGTGCATTTAAGCAATTCGATACTGTTGATGATCACAGTG 780
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ATCATTATTATTCGAAGCCAGATTTAAGAAAGGTTCAGGTAGTGAAAAAGCCTTCAAAAG 840
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      AATGGGCAAAGCGTATTCAGCACGAGTGGAAAGTTCTAGAAAAAGATTTACCAGATACCA 900
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TATTCGTGAGGGCATATGAGGATAGAATGGACCTGCTTAGAGCTGTTATTACGGGACCAG 960
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      CAGGCACTCCCTATCATGATGGTCTCTTCTTCTTTGACATTTACTTCCCTCCTCATTATC 1020
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      CGAGTGTACCTCCACTGGTGAACTATCGGTCTGGTGGGTTGCGGCTTAATCCAAACTTGT 1080
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      ATGCTTGCGGGAAGGTGTGCCTTAGCCTGTTGAACACCTGGTCTGGTAGTGGATGTGAGA 1140
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      GGTGGAGTCCTTCAAACTCAACAATGCTACAAGTCCTGGTCTCAGTTCAGGCTTTGGTGT 1200
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TGAATGCCAAACCTTATTTCAATGAGCCTGGATATGCCATGCATGCTAATACACCTCATG 1260
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      GCGAGAAGAGTTCATTAACTTATAATGAAGATACTTTCCTGCTATCCTGCAGGACAATGC 1320
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TATATTCTCTGCGAAATCCACCAAAGCATTTTGAGGATTTTATCGCCGGTCATTTCCGCA 1380
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      AGTATGGCCAGAGCATCCTGATAGCTTGCAGAGCCTATCTGGACGGTGCCCAAGTTGGAT 1440
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      GTCTTGTTGGAAATGGTGTGCAGGATGTCGATGAGGGCGACAAGAGCTGCTCGGCGAGGT 1500
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      TTAAGAGCGCGCTGAAGAGATTATTTGAGGAACTTCTGATGGAATTCACTGTCAAGGGAG 1560
consensus_323#1      ------------------------------------------------------------
                                                                                 

consensus_323#0      CAGAGTGTGACAAATTCCTAGCTGAG-AAGGCCAAA-GCCGCGGCTT--CTAGAGCTCCA 1616
consensus_323#1      ----------------CNTATCTGAGTAAGGCCTAATGCCGCGGCTNTTCTAGAGCTCCA 44
                                     * ** ***** ****** ** *********   ***********

consensus_323#0      G--CAGAC-ACCACATTGAGGCTATAA-GTTGATAGCCT-CGCGTGGTCGATAGACGGGA 1671
consensus_323#1      TGCTAGACTACCACCTTGAGGCTATAATGNTGATANCCTGCGCGTGGTCGATAGACGGGA 104
                         **** ***** ************ * ***** *** ********************

consensus_323#0      GTAATAATTTCGCTATTG-AAATAGGATCCTCAACTCATTATGCCCC-CGGATTCTAACC 1729
consensus_323#1      GTAATAATTTCGCTATTGTAAATAGGATCCTCAACTCATTATGCCCCGCGGATTNTAACC 164
                     ****************** **************************** ****** *****

consensus_323#0      GTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGTTGCCCCGGTAAACATAA-ACGAC 1788
consensus_323#1      GTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGGTGCCCCGGTAAACATAATACGAC 224
                     ************************************ ***************** *****

consensus_323#0      ATATCCGTGTTTGTA-TTTAGGGGCTATATATCTTTTTTCCCCATAGCATGAGGGTGTCG 1847
consensus_323#1      ANATCCGTGNTTGTAGTTTAGGGGCTATACATCTTTNTTCCCCATAGCATGAGGGTGTTG 284
                     * ******* ***** ************* ****** ********************* *

consensus_323#0      TCTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTT- 1906
consensus_323#1      TTTACCTGCGGAGCCTTAATCCGCTGTGTATGTGATTGACGCCACACCATCTTGGCCTTT 344
                     * ********************************************************* 

consensus_323#0      CTGAAGAATATCATATTGAACTCTTATCAGCAGATCCCTGCTTCTACGCTGGAATTCAGC 1966
consensus_323#1      CTGAAGAATATCATATTGAACTTTTTAAAAAAAAAA------------------------ 380
                     ********************** **   *  * *                          

consensus_323#0      TAGAATGCTAGATTATCAGTT 1987
consensus_323#1      ---------------------