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Oryza sativa
cluster # 3232 cluster # 3232       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3232#0 length = 1294 sequences # 2  

consensusID : consensus_3232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1294
fasta sequence
                              [CCGCGCGGATCGCGGCGCGTAGGCAGCCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGAAGACGGCGGGAGAGCAGCGCCACCGCCCGCGCGGCATGGACCGGAATGCCGGTTCCTTCGTCGCCATGCGCCGCCTCTCCGGCGGCTCCTCCTGCCACGACCCCTCGCCGAACACGTACGCGGAGGTCGTGGCGGGGTCGACGGCGTGGATCGGGAGGGGGTTCTCCTGCGTCTGCGCGCAGAGGAGGGACAGCGACCAGCGCATCTCCTTCGATTTGAGCCCCGCTCAGGAGTGTTGTCTGCAGAGATTACAGAACCGGATAGAGGTACCGTACGATGGTTCAAATGGAGAGCATCAGGAAGCATTAAAGACCCTTTGGCATGTTTCCTTTCCTGGAACTGAACTTTTAGGACTAGTATCAGACCAGTGGAAGGAGATGGGATGGCAAGGGAAAGATCCATCTACAGATTTCAGGGGCGGTGGCTTTATCTCTTTGGAGAATTTACTGTACTTTGCTAAGAACTATACTAAATCCTTCCAGGAGCTCCTTTGTAAGCAGAATGGTGATAGAGCATTGTGGGAATATCCATTTGCTGTTGCTGGTGTAAACATTACATTCATGCTCATTCAGATGCTTGATCTTCAAGCAGCTAAACCAAGGTCGTTGATTGGATCGGTGTTCTTAAATCTACTTTTAGAAAATGATCGAGCTTTTGACATTCTCTATTGCATAACCTTTAAGCTCATGGATCACAAATGGCTTGAAATGCACGCCAATTATATGGATTTCAATGCGGTTATCAAATCTACACGACGACAACTTGAGAGGGAGTTAC-TGCTTGAAGATATCCAACGAATTGAGGACATGCCATCGTACAGGTTTCTCGACCGCTAGCAACTGAATTCTCAGTTTCTCACTTAACCTCGCCACAGGTAGTAAATCTCAATATACAGTCACCTGCAAACCAAGTACAGCGAACTCGATTCGTGGGGACTCCAGGACCATGGACGTGTAACGTGTGCCAAATGGTTTGTGTTTTCACGTTGAAACTGTAACAGGCCTTGTTTGTTTTGGTCTGCTTGTTTATAAAA-GGCACCACTCAGGGTTAACAGGGTATCTGATCAGCCGATGGTTTAACTAGTGTATGTAGAGTGTCCAGATTTTCAACGAGAGGGTTTCACAATGCAGAGCGACAAGTTCTTAGATTTCTCTGTAAAAAGGAAGATCATGTAAGCTAATCTGAGTCTGAAATGCTTCCTAGATCCAT]

[+] EMBL AK071451             [CCGCGCGGATCGCGGCGCGTAGGCAGCCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGGGAGAAGACGGCGGGAGAGCAGCGCCACCGCCCGCGCGGCATGGACCGGAATGCCGGTTCCTTCGTCGCCATGCGCCGCCTCTCCGGCGGCTCCTCCTGCCACGACCCCTCGCCGAACACGTACGCGGAGGTCGTGGCGGGGTCGACGGCGTGGATCGGGAGGGGGTTCTCCTGCGTCTGCGCGCAGAGGAGGGACAGCGACCAGCGCATCTCCTTCGATTTGAGCCCCGCTCAGGAGTGTTGTCTGCAGAGATTACAGAACCGGATAGAGGTACCGTACGATGGTTCAAATGGAGAGCATCAGGAAGCATTAAAGACCCTTTGGCATGTTTCCTTTCCTGGAACTGAACTTTTAGGACTAGTATCAGACCAGTGGAAGGAGATGGGATGGCAAGGGAAAGATCCATCTACAGATTTCAGGGGCGGTGGCTTTATCTCTTTGGAGAATTTACTGTACTTTGCTAAGAACTATACTAAATCCTTCCAGGAGCTCCTTTGTAAGCAGAATGGTGATAGAGCATTGTGGGAATATCCATTTGCTGTTGCTGGTGTAAACATTACATTCATGCTCATTCAGATGCTTGATCTTCAAGCAGCTAAACCAAGGTCGTTGATTGGATCGGTGTTCTTAAATCTACTTTTAGAAAATGATCGAGCTTTTGACATTCTCTATTGCATAACCTTTAAGCTCATGGATCACAAATGGCTTGAAATGCACGCCAATTATATGGATTTCAATGCGGTTATCAAATCTACACGACGACAACTTGAGAGGGAGTTAC TGCTTGAAGATATCCAACGAATTGAGGACATGCCATCGTACAGGTTTCTCGACCGCTAGCAACTGAATTCTCAGTTTCTCACTTAACCTCGCCACAGGTAGTAAATCTCAATATACAGTCACCTGCAAACCAAGTACAGCGAACTCGATTCGTGGGGACTCCAGGACCATGGACGTGTAACGTGTGCCAAATGGTTTGTGTTTTCACGTTGAAACTGTAACAGGCCTTGTTTGTTTTGGTCTGCTTGTTTATAAAA GGCACCACTCAGGGTTAACAGGGTATCTGATCAGCCGATGGTTTAACTAGTGTATGTAGAGTGTCCAGATTTTCAACGAGAGGGTTTCACAATGCAGAGCGACAAGTTCTTAGATTTCTCTGTAAAAAGGAAGATCATGTAAGCTAATCTGAGTCTGAAATGCTTCCTAGATCCAT]
[+] EMBL CA766207             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAAATCTACTTTTAGAAAATGATCGAGCTTTTGACATTCTCTATTGCATAACCTTTAAGCTCATGGATCACAAATGGCTTGAAATGCACGCCAATTATATGGATTTCAATGCGGTTATCAAATCTACACGACGACAACTTGAGAGGGAGTTACTTGCTTGAAGATATCCAACGAATTGAGGACATGCCATCTTACAGGTTTCTCGACCGCTAGCAACTGAATTCTCAGTTTCTCACTTAACCTCGCCACAGGTAGTAAATCTCAATATACAGTCACCTGCAAACCAAGTACAGCGAACTCGATTCGTGGGGACTCCAGGACCATGGACGTGTAACGTGTGCCAAATGGTTTGTGTTTTCACGTTGAAACTGTAACAGGCCTTGTTTGTTCTGGTCTGCTTGTTTATAAAAGGGCACCACTCAGGGTTAACAGGGTATCTGATCAGCCGATGGTTTAACTAGTGTATGTAGAGTGTCCAGATTTTCAACGAGAGGGTTTCACAATGCAGAGCGACAAGTTCTTAGATTTCTCTGTAAAAAGGAAGATCATGTAAGCTAATCTGAGTCTGAAATGCTTCCT        ]


>consensus_3232#0 CCGCGCGGATCGCGGCGCGTAGGCAGCCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGGGAGGGAGGGAGAAGACGGCGGGAGAGCAGCGCCACCGCCCGCGCGGC ATGGACCGGAATGCCGGTTCCTTCGTCGCCATGCGCCGCCTCTCCGGCGGCTCCTCCTGC CACGACCCCTCGCCGAACACGTACGCGGAGGTCGTGGCGGGGTCGACGGCGTGGATCGGG AGGGGGTTCTCCTGCGTCTGCGCGCAGAGGAGGGACAGCGACCAGCGCATCTCCTTCGAT TTGAGCCCCGCTCAGGAGTGTTGTCTGCAGAGATTACAGAACCGGATAGAGGTACCGTAC GATGGTTCAAATGGAGAGCATCAGGAAGCATTAAAGACCCTTTGGCATGTTTCCTTTCCT GGAACTGAACTTTTAGGACTAGTATCAGACCAGTGGAAGGAGATGGGATGGCAAGGGAAA GATCCATCTACAGATTTCAGGGGCGGTGGCTTTATCTCTTTGGAGAATTTACTGTACTTT GCTAAGAACTATACTAAATCCTTCCAGGAGCTCCTTTGTAAGCAGAATGGTGATAGAGCA TTGTGGGAATATCCATTTGCTGTTGCTGGTGTAAACATTACATTCATGCTCATTCAGATG CTTGATCTTCAAGCAGCTAAACCAAGGTCGTTGATTGGATCGGTGTTCTTAAATCTACTT TTAGAAAATGATCGAGCTTTTGACATTCTCTATTGCATAACCTTTAAGCTCATGGATCAC AAATGGCTTGAAATGCACGCCAATTATATGGATTTCAATGCGGTTATCAAATCTACACGA CGACAACTTGAGAGGGAGTTACTGCTTGAAGATATCCAACGAATTGAGGACATGCCATCG TACAGGTTTCTCGACCGCTAGCAACTGAATTCTCAGTTTCTCACTTAACCTCGCCACAGG TAGTAAATCTCAATATACAGTCACCTGCAAACCAAGTACAGCGAACTCGATTCGTGGGGA CTCCAGGACCATGGACGTGTAACGTGTGCCAAATGGTTTGTGTTTTCACGTTGAAACTGT AACAGGCCTTGTTTGTTTTGGTCTGCTTGTTTATAAAAGGCACCACTCAGGGTTAACAGG GTATCTGATCAGCCGATGGTTTAACTAGTGTATGTAGAGTGTCCAGATTTTCAACGAGAG GGTTTCACAATGCAGAGCGACAAGTTCTTAGATTTCTCTGTAAAAAGGAAGATCATGTAA GCTAATCTGAGTCTGAAATGCTTCCTAGATCCAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)