These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT] [+] EMBL AK070753 [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT] consensusID : consensus_3238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF318250 [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3238#0 CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGC 60 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 AGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCT 120 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGT 180 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAA 240 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAA 300 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGT 360 consensus_3238#1 ------------------------------------------TAACATCGGCGACCGGGT 18 ****************** consensus_3238#0 TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 420 consensus_3238#1 TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 78 ************************************************************ consensus_3238#0 TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGG 480 consensus_3238#1 TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGT 138 *********************************************************** consensus_3238#0 TGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 540 consensus_3238#1 TTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 198 * ********************************************************* consensus_3238#0 ATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGT 600 consensus_3238#1 ATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 258 ************************ * ** * * * consensus_3238#0 GGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTG 660 consensus_3238#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 295 *** * ** * consensus_3238#0 AGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGA 720 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 ACGGAATCTTCTATTATGAATT 742 consensus_3238#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||