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Oryza sativa
cluster # 3238 cluster # 3238       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3238#0 length = 742 sequences # 1  
consensus_3238#1 length = 295 sequences # 1  

consensusID : consensus_3238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence
                              [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT]

[+] EMBL AK070753             [CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGCAGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCTGCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGTGGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAAGTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGGTGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGAACGGAATCTTCTATTATGAATT]


>consensus_3238#0 CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGC AGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCT GCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGT GGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAA GTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAA GCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGT TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGG TGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA ATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGT GGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTG AGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGA ACGGAATCTTCTATTATGAATT



consensusID : consensus_3238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence
                              [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318250             [TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_3238#1 TAACATCGGCGACCGGGTTAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTG GGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGC AGTTTCTGCTCAACCTGTTTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAAC ATAGACTCCTCTTCTGCAATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3238#0      CGATTCGCCCCCCTCCTCACTCACTGTCGTGCTTGCCTATCGTCTCCGCTCCCGGTGCGC 60
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      AGCCGGCGAGCCGCAGCCGCCGCCCCCCTCTCCGCGCCGGCGGCCTCCTCCGCCCTCTCT 120
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GCCGCCAGTCCCCGGCCGATCCCATCGCCAGTCGGCGGGCGGTCTCCCCGCGGGTGGGGT 180
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GGGGGCGGGACGGACGATGAAGCCGGTGGTGGGGATCGTGGTGTCGAACAAGATGCAGAA 240
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GTCGGTGGTGGTGGCCGTCGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAA 300
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGGT 360
consensus_3238#1      ------------------------------------------TAACATCGGCGACCGGGT 18
                                                                ******************

consensus_3238#0      TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 420
consensus_3238#1      TAAGCTTGATCCTTCTAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCT 78
                      ************************************************************

consensus_3238#0      TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGG 480
consensus_3238#1      TCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTGCAGCAGCAGTTTCTGCTCAACCTGT 138
                      *********************************************************** 

consensus_3238#0      TGCCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 540
consensus_3238#1      TTTCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTTCTGCA 198
                      *  *********************************************************

consensus_3238#0      ATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGT 600
consensus_3238#1      ATAAATGGACACTTTTTCGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 258
                      ************************       *        **    *  *  *       

consensus_3238#0      GGCTCCCTTCAAATGCACTCGTGTTTTTGAACCATGTGAATGGTGGTTATCAACTCACTG 660
consensus_3238#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 295
                                ***   *            **  *                          

consensus_3238#0      AGGGTGCATCTTCAAATACTTCGAAATTCATGGATGCAACAGACCATATCCATATGTAGA 720
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      ACGGAATCTTCTATTATGAATT 742
consensus_3238#1      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)