These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCCACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGGCGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGCAATA] [+] EMBL CF291795 [CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCCACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGGCGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGTGCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTTCGTCAGACCCATCAAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGCAATA] consensusID : consensus_3246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [GGGCTCAAATTTTTGCTCTTGGGATCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTGCTTTGTTCTGGAATAGTTTGAGCTACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAATGGTGAAGTTCTGTGACATTGAACTTTGCCCTAATGGTGAAGTTCATGGGTAGTATCAGAATCCCTTAAGGTGCTTGCCCATGTTAAGGCAATACTGTTTTTCCTCCTCCCCAGTATTGTTTGTTCCCTTAAGTCCTTACAATCCAAATTTTGTGGATACACATCCCTTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGTTTTTTGTAACGCTGTAAGTTCAAATCTGTTTGAAATGGGCCAAACAATTGAGGCATCAGGTATACAAATTTTTTGGCGGCCCAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF291794 [GGGCTCAAATTTTTGCTCTTGGGATCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTGCTTTGTTCTGGAATAGTTTGAGCTACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAATGGTGAAGTTCTGTGACATTGAACTTTGCCCTAATGGTGAAGTTCATGGGTAGTATCAGAATCCCTTAAGGTGCTTGCCCATGTTAAGGCAATACTGTTTTTCCTCCTCCCCAGTATTGTTTGTTCCCTTAAGTCCTTACAATCCAAATTTTGTGGATACACATCCCTTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGTTTTTTGTAACGCTGTAAGTTCAAATCTGTTTGAAATGGGCCAAACAATTGAGGCATCAGGTATACAAATTTTTTGGCGGCCCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3246#0 CGCCTTTTGCCTCTCCGATTCAAGCCGACGAGGCGACGATGGACGCCCTCACCCGCCTCC 60 consensus_3246#1 ------------------------------------------------------------ consensus_3246#0 ACCGCGCCCTCGCCGGCGGCGACGACGACGAGGAGCAGCCGGAGGATTCTATCCTTGG-- 118 consensus_3246#1 ------------------------------------GGGCTCAAATTTTTGCTCTTGGGA 24 * * * ** * ***** consensus_3246#0 -CGACACCGAGGGCATACGCTCCCTATCCCCTGTCCAGCGGGTCTACGGCTTCGCCGCGT 177 consensus_3246#1 TCCATTCCAAGGTTTTACCATTGATGGCAATCATATGCAAGATCTGTG-CTTTGTTCTGG 83 * * ** *** *** * * * * * *** * *** * * consensus_3246#0 GCTTGGTTGCGGGACTGGCTCTGATGATCCTGTCACTTGTAGTTTT-CGTCAGACCCATC 236 consensus_3246#1 AATAGTTTG-------AGCT---ACATCCCTTTCGCTCGGAGAATGGTGTTTGACCTAAT 133 * * *** *** * *** ** ** * ** * ** **** * consensus_3246#0 AAATTTGCAGTCATTTTACATTTGGAAACATCCTAGCAGTTGGGAGCTTTCCTAATAGGG 296 consensus_3246#1 GG---TGAAGTTCTGTGACATTGAACTTTGCCCTAATGGT---GAAGTTCATGGGTAGTA 187 ** *** * * ***** **** ** ** ** *** consensus_3246#0 CCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTAC 356 consensus_3246#1 TCAGA--ATCCCTTAAGG----TGCTTGCCC------ATGTTAAGGCAATA-CTGTTT-- 232 ** * * ** *** ****** ** *** * **** * ** *** consensus_3246#0 GGTGGATTTGTTTTTCTGGCTCTAATTTTTGCTCTTTGGATCCATTCCAAGGTTCTAACA 416 consensus_3246#1 ------TTCCTCCTCCC--CAGTATTGTTTGTTCCCTTAAGTCCTTACAA--TCCAAATT 282 ** * * * * ** * **** ** * * * ** *** * * ** consensus_3246#0 TTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGGTATAGTTTG--AGCTACATCC 474 consensus_3246#1 TTG--TGGATACACATCCC---TTTATGTTTGGTATAAATGTATTACATCAGGCCCTTGT 337 *** ** * ** ** * * * ** * ** * ** * ** * * consensus_3246#0 CTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGAC 534 consensus_3246#1 TTTTTGTAACGCTGTAAGT-TCAAATCTGTTTGAAATGGGCCAAACAATTGAGGC---AT 393 *** * ** ** ** * *** * * * * * * *** * consensus_3246#0 CTGATGGTGAAGTTCATGGGTAGTATCAGGATGCCTTAAGGTGCTTGCCCATGTTAATGC 594 consensus_3246#1 CAGGTATACAAATTTTTTGGCGGC-CCAAAAAAAAAAAAAAAAAAAAAAAA--------- 443 * * * ** ** * ** * ** * ** * consensus_3246#0 AATA 598 consensus_3246#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||