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Oryza sativa
cluster # 3253 cluster # 3253       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3253#0 length = 1164 sequences # 1  
consensus_3253#1 length = 533 sequences # 1  

consensusID : consensus_3253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1164
fasta sequence
                              [ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT]

[+] EMBL AK105634             [ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCGGCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCCCCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTCGGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCTCCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCCCGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTCGCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTCAAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCCCCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTCTCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTGGTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGGTCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCT]


>consensus_3253#0 ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCG GCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCC CCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTC GGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCT CCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCC CGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTC GCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTC AAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCC CCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTC TCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTG GTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGG TCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG AGGGAGTACTATCAACCAGGTTGGGGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTA CTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTG CCATTCGTTCGCATGAGATGTGCT



consensusID : consensus_3253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA]

[+] EMBL CA766333             [CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA]


>consensus_3253#1 CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGGGCAGAGGTGATC GCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGGGACAGGGACGTG CTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTGTTCGAGGAGGAC GGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAGCCATGGTGGAAG CTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAATCGGTGATGTCGC ACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAGAGGGAGTACTAT CAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTTCAAAAGAGTACT CTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATTATTTGGACTGCC ATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTTAACTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3253#0      ATCCCTAACCCTAACCTCCTCCTCCGACCGTCGCGCTCTCTCTCCACCTCCACCACGCCG 60
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      GCAACCCGCGCCCCCGCCACCCCGGTGGCCGTCCTCTGGGATTTGGCCGCCTCCCGGCCC 120
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CCCTCCACCCTCCCCCTCTACGACGCCGCCGTGCGGCTCCACCTCGCCGCCACCTCCTTC 180
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      GGCCGGGTCCGCCTCTCCGCCGCCTTCGTCCACCCCGGCCACCGCCTCCCTGCCCCGTCT 240
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CCGTCCGCCGCCGCGGCCGCCGTGCACCTCTGCCGCGTCTGCGGCCGCCGCTTCCGCGCC 300
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CGCGACACGCTGCTCCGCCACTTCGACGCGATCCACGCCCGCGAGCACGCCAAGCGCCTC 360
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      GCGCGGATCGACTCCTCCCGCGGCGACCGACGCGTGCGCCTCGCCGCCGCGCTCTCCCTC 420
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      AAGCTCTCCAAGTACGAGAAGGCCGCCCGCGAGCTCACCGCCGCCGCCGACCCCTGCTCC 480
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      CCCGCCGACGACCTCCGCAGGGCCCGCGTCGCCGTCGAGCTCTCCCCGACCCTGTCCGTC 540
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      TCCCTCCTTGAGCGCGCCCACGAGGTGCTCGACGGAGGGTCCGTTCGGTGCCTGATGCTG 600
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      GTCTCGGCCCGCGACGAGCTCGCTCCTCTGCTGCGCCTCGCGAGGGAGAAGGGCGTCCGG 660
consensus_3253#1      ------------------------------------------------------------
                                                                                  

consensus_3253#0      TCCGTGGTCGTCGGCGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 720
consensus_3253#1      ------------CAAGGGGAGTCCGGGCCGGCGAGGTGGGCTGACGTTGGGTTCAGCTGG 48
                                     *********************************************

consensus_3253#0      GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 780
consensus_3253#1      GCAGAGGTGATCGCCGGTAAGGCCAGGAAGGCGGCGCCGTCTGTGTCCGGCAAGTGGCGG 108
                      ************************************************************

consensus_3253#0      GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 840
consensus_3253#1      GACAGGGACGTGCTCAAGAGGCTGGAATGGAGGTACGACGACGACGACGAAGAGGTGGTG 168
                      ************************************************************

consensus_3253#0      TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 900
consensus_3253#1      TTCGAGGAGGACGGTGACGAGGATGGGATCGATGAGCTGACGAGGAATTCCAAGGGGAAG 228
                      ************************************************************

consensus_3253#0      CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 960
consensus_3253#1      CCATGGTGGAAGCTGGAATCGGATGGCGAGGACTCCAGTGCTTGCCGTTGAATGGTGAAT 288
                      ************************************************************

consensus_3253#0      CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 1020
consensus_3253#1      CGGTGATGTCGCACACAAGGTGTTCGTCCATTTGCTCCCGTGGATCCTTCCATCCAACAG 348
                      ************************************************************

consensus_3253#0      AGGGAGTACTATCAACCAGGTTGGGGA----------CCTGGTGCTTTGCCTGACCATTT 1070
consensus_3253#1      AGGGAGTACTATCAACCAGGTTGGGGAACTACAATGACCTGGTGCTTTGCCTGACCATTT 408
                      ***************************          ***********************

consensus_3253#0      CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 1130
consensus_3253#1      CAAAAGAGTACTCTTACACACGTAACAGTAGTAATTGTACGGAAGATATCTGTTCAGATT 468
                      ************************************************************

consensus_3253#0      ATTTGGACTGCCATTCGTTCGCATGAGATGTGCT-------------------------- 1164
consensus_3253#1      ATTTGGACTGCCATTCGTTCGCATGAGATGTGCCTTTCCAATAGCACCAACTCNTGTTTT 528
                      *********************************                           

consensus_3253#0      -----
consensus_3253#1      AACTA 533
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)