These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence [AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTACTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGNNTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAATATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATTGTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATATTTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAATATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTTATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA] [+] EMBL CB096728 [AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTACTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGNNTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAATATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATTGTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATATTTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAATATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTTATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA] consensusID : consensus_3255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [TATTGCACAAATCATCATGTTCTTGCTTAATTCCATTCTACTACTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTTATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAATATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATTGTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATATTTCCATGGCGATCTCAGCTTGCCAAGGCGCTATCTCCGTCCAAAAAAAATTCTAATATTAGATGTGATGGTTTATAGTACAATAAATCTGGACGAGNAGNTTATACAAATTTATTGTACTAGAAAATAATCTCATCCAATAGTAGATTGGNTTTTTGGGACGGAGGGAGTATATTGCAGATGTGTCTA] [+] EMBL CA766343 [TATTGCACAAATCATCATGTTCTTGCTTAATTCCATTCTACTACTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCTTCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTTATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGCCATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCGGTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAATATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATTGTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTTTGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATCATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATATTTCCATGGCGATCTCAGCTTGCCAAGGCGCTATCTCCGTCCAAAAAAAATTCTAATATTAGATGTGATGGTTTATAGTACAATAAATCTGGACGAGNAGNTTATACAAATTTATTGTACTAGAAAATAATCTCATCCAATAGTAGATTGGNTTTTTGGGACGGAGGGAGTATATTGCAGATGTGTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3255#0 AAGGGGGGTGGGATTNTATTGCACAAATCATCATGTTCTTGCTTCAATTCCATTCTACTA 60 consensus_3255#1 ----------------TATTGCACAAATCATCATGTTCTTGCTT-AATTCCATTCTACTA 43 **************************** *************** consensus_3255#0 CTCTGTATATGTTGTGCGGNTTTCAGTGGGNGATCACCGGNTCAAGCCTAGCTGACATCT 120 consensus_3255#1 CTCTGTATATGTTGTGCGGATTTCAGTGGGTGATCACCGGATCAAGCCTAGCTGACATCT 103 ******************* ********** ********* ******************* consensus_3255#0 TCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCNAAAATTCCTGCGTTGN 180 consensus_3255#1 TCCAAGGCTAGAATAAGGCAAGAACATGATCGGTTTCCACTGCAAAAATTCCTGCATTTT 163 ******************************************* *********** ** consensus_3255#0 NTTTTATTTTATTGNTTTTCTTCTCTTATTCATAGATCAAGNAAACTTATATGNGGCTGC 240 consensus_3255#1 ATTTTATTTTATTGTTTTTCTTCTCTTATTCATAGATCAAGTAAACTTATATGTGGCTGC 223 ************* ************************** *********** ****** consensus_3255#0 CATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCG 300 consensus_3255#1 CATGCTTAGTATTTTCGTGCCGACCTTGAAATGACAATTTGTGTCTATGTGCTTGCTCCG 283 ************************************************************ consensus_3255#0 GTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGNGACAAT 360 consensus_3255#1 GTCGTGAAAAAAATCGCAGAGGGAGATTGCTGATTTGTTGCCGATATTCATGGTGACAAT 343 ***************************************************** ****** consensus_3255#0 ATTAGGCTTATTACTCGTGAGNTTATATTGNTCCATAGAAAACACAATAGCCATATTATT 420 consensus_3255#1 ATTAGGCTTATTACTCGTGAGTTTATATTGTTCCATAGAAAACACAATAGCCATATTATT 403 ********************* ******** ***************************** consensus_3255#0 GTNCCTTGGGAAAACGTGGTCGTCTCAACAATGNNCTTGGGCTTGCAACCTTTCTGCTTT 480 consensus_3255#1 GTACCTTGGGAAAACGTGGTCGTCTCAACAATGTACTTGGCCTTGCAACCTTTCTGCTTT 463 ** ****************************** ***** ******************* consensus_3255#0 TGTGATTGCCTTGGTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATC 540 consensus_3255#1 TGTGATTGCCTTGTTGCCAAGGAAGAAGAACACACCCAATCAGCTAGCAACAATCCCATC 523 ************* ********************************************** consensus_3255#0 ATCTGGCAATCAGAAAAGCAAAAAGGGGGGGGNGGTATCATCCTACCAGGCAGAGTATAT 600 consensus_3255#1 ATCTGGCAATCAGAAAAGCAAAAAGGTGGTGGTGTTATCATCCTACCAGGCAGAGTATAT 583 ************************** ** ** * ************************* consensus_3255#0 TTNCATGGNGATCTCAGCTTGCCAAGGGNGCTATCTCCGGCCCAAAAAAAAAATTCTAAT 660 consensus_3255#1 TTCCATGGCGATCTCAGCTTGCCAAGG-CGCTATCTCCGTCC---AAAAAAAATTCTAAT 639 ** ***** ****************** ********** ** *************** consensus_3255#0 ATTANATGGGGATGGGNTTATAGNACAATAAATCTNGGACGAGGAGGTTATACCAATTTT 720 consensus_3255#1 ATTAGATGTGAT--GGTTTATAGTACAATAAATCTGG-ACGAGNAGNTTATACAAATTTA 696 **** *** * ** ****** *********** * ***** ** ****** ***** consensus_3255#0 ATTTGNGCTAAAAAAATAATCCCCANTCCANTAGNAAAATTGGGGTTTTTTGGGA----- 775 consensus_3255#1 --TTGTACTAGAAAA-TAATCTC--ATCCAATAGTAGATT---GGNTTTTTGGGACGGAG 748 *** *** **** ***** * **** *** * * * ** ********* consensus_3255#0 ----------------------- consensus_3255#1 GGAGTATATTGCAGATGTGTCTA 771 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||