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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1977 fasta sequence
[AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATCATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTATGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGCTCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGGACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCGCCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGGCCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGGAGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCGTCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGATGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCAAGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGTACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGATCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGCACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCCTCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGAGCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCCTGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGGCGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGATCGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCATCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGGAAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGGCCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGAAGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACCACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGACGCTGCTCGACTTCATGGATGACTGGAACGGTGACGCCGATAGGCCCTCGCCGACGGCGCCTGAGCCGGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCT]
[+] EMBL AK070142 [AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATCATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCTGCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCTCGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGGCAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTATGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGCTCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGGACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCGCCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGGCCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGGAGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCGTCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGATGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCAAGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGTACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGATCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGCACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCCTCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGAGCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCCTGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGGCGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGATCGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCATCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGGAAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGGCCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGAAGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACCACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGACGCTGCTCGACTTCATGGATGACTGGAACGGTGACGCCGATAGGCCCTCGCCGACGGCGCCTGAGCCGGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCT]
consensusID : consensus_3258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[GGGGCCNAATTGGGTTACCGGNCCCCCCCTTGGAGTTCGACCCAGNTCCCGGAACGCTGCTCGATTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACGGCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA]
[+] EMBL AU069857 [GGGGCCNAATTGGGTTACCGGNCCCCCCCTTGGAGTTCGACCCAGNTCCCGGAACGCTGCTCGATTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACGGCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGACGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTCGCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTTGATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCTGAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACATCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3258#0 AATGCGGACGATCGATCGAACCACCCGGTTCTTGGATTACCGGGACAAACAACAATCATC 60
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 ATCACCTCGGGATTAATCATTTCAACCCTCCCCTTTTTGTTCCTTCTCGTGGCTCTCTCT 120
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 GCGTGGGTGTTCTGCAGCGCCAATCCTGGATCATCATCGTTTGCTTCTGCACACGTCGCT 180
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CGAGGCCGCAGAAAGCTGCGTCCTTTACAGCTGGCCACGGTGGAGTTGATCGGTTGATGG 240
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CAGCGAGCGGCGGTGGGTCGCTGCTAGAGAGACGAAGCTCGGTGCGACGGTCGCAGAGTA 300
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TGGTGAGCGAGGAGGGCCGGGGCACGCCGGCCGATGAGGATCTCGGCGGCGGCGGCACGC 360
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TCAAGATTGGCGCCGTGCTCGACAAGGACAGCGCGGCGCCCAAGTCGCGGCTCGCCAAGG 420
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 ACACCGGCGAACACGGCGGCGGAGGACCTTCCGAGATGGAGCTGATGAAGGAGAAGTTCG 480
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CCAAGCTGCTGCTCGGGGAGGACATGTCGGGGTCCGGGAAGGGCGTGCCGTCGGCGCTGG 540
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CCGTGTCCAACGCCATCACCAATCTTGCAGCTTCTGTGTTTGGTGAGCAACGGAAGCTGG 600
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 AGCCCATGGCGCCGGACAGGAAGGGGAGGTGGAAGAAAGAGGTCGGCTGGCTTCTATCCG 660
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TCGCCGATCACATCGTCGAGTTCGTCGCGAAGAAACAAGTCTTGGACAACGGCGTTGAGA 720
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TGGAGGTGATGGGCACGCAGCAGCGGAGAGATCTCCAGGCGAACATACCGGCGTTGCGCA 780
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 AGATCGACACGATGCTCCTGGATTACCTGGACAACTTCAAGGATCGGAACGAGTTCTGGT 840
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 ACGTGAAGCGCGACTCGTGCTCGGATAGCGACGAGCAGAGATCAGACGAGAAATGGTGGA 900
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TCCCGATCGTGAAGGTCCCGCCTGGCGGGCTCTCGCCGGCGTCCAGAGGGTGGCTCCAGC 960
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 ACCAGAAGGAGCTGGTGAACCAGGTGCTCAAGGCGGCCATGGCCATCAACGCCAACTGCC 1020
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TCATGGAGATGGCCATCCCGGAATCCTACCTCGAATCCCTCCCCAAGAACGGGAGGGCGA 1080
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 GCCTCGGCGACGCGCTGTACCGGATCATCACCGACGTGGAGTTCGACCCGGACGTGTTCC 1140
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TGTCGACGGTGGACCTTACGTCGGAGCACAAGATCCTGGACCTCAAGGACCGGATCGAGG 1200
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CGTCGGTGATCATCTGGAACAGGAAGGTGCACAACAAGGACGGCAAGTCGGCGTGGGGAT 1260
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CGGCCGTCAGCCAGGAGAAGAGGGAGCAGTTCGAGGAGCGCGCGCAGACGCTCCTGCTCA 1320
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 TCATCAAGCACCGGTACCCCGGCATCCCCCAGTCCACCCTCGACATCGCCAAGATACAGG 1380
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 AAAACAGGGACGTCGGGTTCGCCATCCTGGAGAGCTACTCCAGGGTGCTGGAGAGCTTGG 1440
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 CCTTCAACGTCATGTCCCGGATAGAGGACGTCCTCAACGCCGACGACCACGCCAGGGAGA 1500
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 AGGCCAAGAAGGAGGCGCCGCCGGCGCCGGCTATGGCCAACGACGCCGCGGAGCACCACC 1560
consensus_3258#1 ------------------------------------------------------------
consensus_3258#0 ACCAGCAGGCTGGCGAGGTGGATGCCCCCTGCAAAATGACAGGGTCACCCAACGGCAGGA 1620
consensus_3258#1 ----GGGGCCNAATTGGGTTACCGGNCCCCCCC---TTGGAGTTCGACCCAGNTCCCGGA 53
* * * *** * *** * * ** ***** * ***
consensus_3258#0 -CGCTGCTCGACTTCATGGATGACTGGAACGGT--GACGCCGATAGGCCC-TCGCCGACG 1676
consensus_3258#1 ACGCTGCTCGA-TTCATGGATGACTGGAAACGTTGAACGCCGATAGGCCCCTCGCCGACG 112
********** ***************** ** ************** *********
consensus_3258#0 GCGCCTGAGCC-GGCCGCACAGGAGGACGGAAGGCTGATGAAGCTGCCC-AACATCATGA 1734
consensus_3258#1 GCGCCTGAACCCGGCCNCACAGGAGGACGGAAGGCTGATGAAGCTGCCCCAACATCATGA 172
******** ** **** ******************************** **********
consensus_3258#0 CGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTC 1794
consensus_3258#1 CGAACCTGAAGCAGACGTACATGGACAACCTGTTCGGGGCGCATAGAAGCCCACCAGGTC 232
************************************************************
consensus_3258#0 GCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTT 1854
consensus_3258#1 GCCATTAAAAAGTGGCACGATATTTTGCATGTATTATCACATAGTGTACATATATATTTT 292
************************************************************
consensus_3258#0 GATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCT 1914
consensus_3258#1 GATCAAACTGGGCTCTCGCTTGAGTAGCCCGCCGTTTTCGGCTTCTGGGTTTGTAGAGCT 352
************************************************************
consensus_3258#0 GAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACA 1974
consensus_3258#1 GAGAATCTTCTGTACCATTTCAAGGGGTTGAGGGGTTGACCAATGTATACGACAGAGACA 412
************************************************************
consensus_3258#0 TCT------------------------------- 1977
consensus_3258#1 TCTACTGACGTTCATGCAGGTGTGCAAGAAAAAA 446
***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||