These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC] [+] EMBL OSC8411 [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC] consensusID : consensus_3270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA] [+] EMBL AU088687 [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3270#0 AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGC 60 consensus_3270#1 AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGC 60 ********************************** ************************* consensus_3270#0 CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120 consensus_3270#1 CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120 ************************************************************ consensus_3270#0 ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAG 180 consensus_3270#1 ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAA----AAAAA 176 ******************************************* *** * consensus_3270#0 AGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAG 240 consensus_3270#1 AA---------------------------------------------------------- 178 * consensus_3270#0 GGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC 274 consensus_3270#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||