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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3270 cluster # 3270       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3270#0 length = 274 sequences # 1  
consensus_3270#1 length = 178 sequences # 1  

consensusID : consensus_3270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence
                              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC]

[+] EMBL OSC8411              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAGAGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAGGGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC]


>consensus_3270#0 AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGC CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAG AGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAG GGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC



consensusID : consensus_3270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence
                              [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA]

[+] EMBL AU088687             [AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGCCTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACAATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA]


>consensus_3270#1 AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGC CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3270#0      AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTNATGCACTCCTTTTTGTATCATCGGC 60
consensus_3270#1      AAGAAACTTGGAAGTGAGCACTGCATGTGTTACTTATGCACTCCTTTTTGTATCATCGGC 60
                      ********************************** *************************

consensus_3270#0      CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120
consensus_3270#1      CTTCCTGAAGTAGGAAATCTCCATGTTGTCATTTTCTTGTTAGCCACTAGTCTTTCAACA 120
                      ************************************************************

consensus_3270#0      ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGCATCTTCCTTTTTTCAG 180
consensus_3270#1      ATCAAAATGATTCCCACTTATAATAGCTTGTACAATCCATCGGNATCAAAA----AAAAA 176
                      ******************************************* ***           * 

consensus_3270#0      AGTTTTTTTTCAGAAGTGGAAATGTAGTCCTTTGCTGGGGTTGCTAATAGTTAATATAAG 240
consensus_3270#1      AA---------------------------------------------------------- 178
                      *                                                           

consensus_3270#0      GGTTGTAGTGTNAGGTGTAGGACCATTTTTTTGC 274
consensus_3270#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)