These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATGCTGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGATCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATGTTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGGAAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCCCAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGATGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACACAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGNTAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTCCTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTTTCTATCCATCAATATA] [+] EMBL CA766542 [CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATGCTGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGATCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATGTTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGGAAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCCCAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGATGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACACAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGNTAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTCCTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTTTCTATCCATCAATATA] consensusID : consensus_3283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [AGGAAATTATGCCATTTCTTTCTTGCTTCATGAAAGTAACATAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGGAAATGCCTCCCCATGCATTACATTTAAATTCAGGGAGGAGCAAAGGGCCAACTGCATCTTCTATTGCATGGCCTTGTTATGGATGCAACCATACAGGAATTGACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTATGAAATTGCAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTCCCCCCCGCACCAGTATTTGCCAACGGCCCTACACTCTTGAACTCTAGCCAAACCCCGGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCCTGATGTAACTATATAAAATCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACATGCTTTTGTTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT] [+] EMBL CB620067 [AGGAAATTATGCCATTTCTTTCTTGCTTCATGAAAGTAACATAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGGAAATGCCTCCCCATGCATTACATTTAAATTCAGGGAGGAGCAAAGGGCCAACTGCATCTTCTATTGCATGGCCTTGTTATGGATGCAACCATACAGGAATTGACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTATGAAATTGCAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTCCCCCCCGCACCAGTATTTGCCAACGGCCCTACACTCTTGAACTCTAGCCAAACCCCGGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCCTGATGTAACTATATAAAATCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACATGCTTTTGTTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3283#0 CAAGGGGAGAATAAATGATCCTGTCAATTAGCGTGAAGATGAACAGTAGCATCAGCGATG 60 consensus_3283#1 --------------------------------AGGAAATTATGCCATTTCTTTCTTGCTT 28 *** * * * * * * * consensus_3283#0 C-TGCAGTTAATAACAACTGTTCCTTACCCTGCAGGGATCCATGATGTAACTATATAAGA 119 consensus_3283#1 CATGAAAGTAACA-TAACCTCCGCCCAAAAAACAAAAGGCCAAAAAAAAAAAAGAAGAGG 87 * ** * *** * *** * * ** *** * ** * * ** consensus_3283#0 TCTTGCTGCTTGCATTGTAGCATACTCAAGATGACTCTGCATGCATACAGGGTGAACATG 179 consensus_3283#1 AAATGC--CTCCCCATGCATTACATTTAAATTCAG---GGAGGAGCAAAGGGCCAAC--- 139 *** ** * ** * * * * ** * * * * * * **** *** consensus_3283#0 TTAGTCTTGGATTATCTGNTTAAGTTACTAGCAATGACAACAAGATCTTACTGAATGNGG 239 consensus_3283#1 TGCATCTTCTATTGCATGGCC---TTGTTATGGATG-CAAC-----CATACAGGA-ATTG 189 * **** *** ** ** ** *** **** * *** * * * consensus_3283#0 AAACATGCTTTTGTNCCNNNATCGATTGGTTACCCTGACGGCTAGCTCAGTGCAACATCC 299 consensus_3283#1 ACTCCAACTACCCCCCCTATACAAAAAATGTCCAAAGTTATTCAGTTTA---TGAAATTG 246 * * ** ** * * * * * ** * * * ** consensus_3283#0 CAAGTATGCCCTACAAATTCCCCTGAATAAAAAAAAATGTCATATACAGGTGAGAAACGA 359 consensus_3283#1 CAATTTTTTTTTTGCTTTGCCCCCCAAAAAAAAGTTATTTGTTCAGTTCTTCTGGCGCTC 306 *** * * * * **** ** ***** ** * * * * * consensus_3283#0 TGTGCGGCATCAATGGGAACAAATTAATTAATTACCAGAAGGAATTTCATACACAGTACA 419 consensus_3283#1 CCCCCCGCACCAGTATTTGCCAACGGCCC---TACACTCTTGAACTCTAGCCA-AACCCC 362 * *** ** * * ** *** *** * * ** * * consensus_3283#0 CAGACCATACCGTCAAATAGCATCACAACAAGCAGCCTGCAATTGGAATATTGGATAAGN 479 consensus_3283#1 GGGGGGGGAGGAAAATAAATGATCCCTGCAGGGATCCC-TGATGTAACTAT---ATAAAA 418 * * * * * *** * ** * * ** ** * *** **** consensus_3283#0 TAAAGCATTTCAAATCTTTGGCCGGATGACTGCAATCAGATACGTTATCCTTTATTTCTC 539 consensus_3283#1 TCTTGCTGCTTGCATTGGAACATACTCAAAAAGACTTGAATGGGGAAACAT--GCTTTTG 476 * ** * ** * * * ** * * * * ** * consensus_3283#0 CTCCGNAACTCCATCTTTTATTTNCTTTTTGNTTTATAATATTNTGCNTGGCACATTTTT 599 consensus_3283#1 TTCCGAAATCGATTGGTTACCCTGACGGCTAGCTCAGGGCAACATCCCAAGTATGCCCT- 535 **** ** * ** * * * * * * * * * * consensus_3283#0 TCTATCCATCAATATA 615 consensus_3283#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||