cluster # 3284

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Oryza sativa
cluster # 3284 cluster # 3284 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3284#0 length = 443 sequences # 1

consensus_3284#1 length = 394 sequences # 1

consensusID : consensus_3284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACAAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCAAGGGCATAGCCGACTCGATGGCACACGGCAAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATAATTCTAAGGGATTTAGAGATCAAAAA]

[+] EMBL AU172521             [TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACAAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCAAGGGCATAGCCGACTCGATGGCACACGGCAAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATAATTCTAAGGGATTTAGAGATCAAAAA]




>consensus_3284#0
TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACAAGTGGTCG
GTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGGC
GCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGC
CTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGC
GTCGCCAAGGGCATAGCCGACTCGATGGCACACGGCAAGGAGCAGCGCTAGTAAAATCTT
TTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCAACT
GTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATAATT
CTAAGGGATTTAGAGATCAAAAA

consensusID : consensus_3284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [CGACGACGGACACAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGACTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGACTGGGAGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGAAAATAATTCTAAGGGATTTAGAGAAAAAAAAAA]

[+] EMBL BI808715             [CGACGACGGACACAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGACTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGACTGGGAGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGAAAATAATTCTAAGGGATTTAGAGAAAAAAAAAA]




>consensus_3284#1
CGACGACGGACACAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGACTGCCGGATGG
GCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGACTGGGAGCGGAGGGGCTC
TACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATA
CAGTCCATCGCCTACTGCGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGG
AGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATG
TCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATG
AAAATAATTCTAAGGGATTTAGAGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3284#0      TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACA-AGTGGTC 59
consensus_3284#1      ----------------------------------------CGACGACGGACACAGTGGTC 20
                                                              ************ *******

consensus_3284#0      GGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGG 119
consensus_3284#1      GGTGCTCTGCTCGGCGCACCAGATGGGGA-CTGCCGGATGGGCGCGAGCCCCCGCGACGG 79
                      ***************************** ******************************

consensus_3284#0      CGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAG 179
consensus_3284#1      CGCCGTCGACGTCGCCGGCGAGA-CTGGGAG-CGGAGGGGCTCTACGTCTGCGACGGCAG 137
                      *********************** ******* ****************************

consensus_3284#0      CCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTG 239
consensus_3284#1      CCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTG 197
                      ************************************************************

consensus_3284#0      CGTCGCCA-AGGGCATAGCCGACTCGATGGCACACGGCA-AGGAGCAGCGCTAGTAAAAT 297
consensus_3284#1      CGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAAT 257
                      ******** ************************ ***** ********************

consensus_3284#0      CTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCA 357
consensus_3284#1      CTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCA 317
                      ******************************* ******* ********************

consensus_3284#0      ACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATA 417
consensus_3284#1      ACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGA-----------AAATA 366
                      *********************** ********************           *****

consensus_3284#0      ATTCTAAGGGATTTAGAGATCAAAAA-- 443
consensus_3284#1      ATTCTAAGGGATTTAGAGAAAAAAAAAA 394
                      *******************  *****