cluster # 3285

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Oryza sativa
cluster # 3285 cluster # 3285 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3285#0 length = 459 sequences # 1

consensus_3285#1 length = 442 sequences # 1

consensusID : consensus_3285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [GCCGCTTTTTTTTTTTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGCTCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAATTTGGTCTCCCCTTGTCTCGTCCTCT]

[+] EMBL CA760078             [GCCGCTTTTTTTTTTTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGCTCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAATTTGGTCTCCCCTTGTCTCGTCCTCT]




>consensus_3285#0
GCCGCTTTTTTTTTTTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTT
GGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAG
AATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCG
CATCATCTTTTATAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCT
TCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACT
AGGGTTACACTTTGGAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTT
CTTCGCATCCGAGCTCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTC
TTCAGCTCCTCAATTTGGTCTCCCCTTGTCTCGTCCTCT

consensusID : consensus_3285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGATATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATATACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTAC]

[-] EMBL AU172533             [TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGATATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATATACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTAC]




>consensus_3285#1
TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGA
TATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATA
TACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATA
CTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATA
TCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTA
GGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACT
TGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTG
GAAGCATTACGATCACAGTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3285#0      ------------------------------------------------------------
consensus_3285#1      TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGA 60
                                                                                  

consensus_3285#0      --------------------------------------------GCCGCTTTTTTT--TT 14
consensus_3285#1      TATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATA 120
                                                                  *** * *       * 

consensus_3285#0      TTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATA 74
consensus_3285#1      TACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATA 180
                      *     *  *  **** *******************************************

consensus_3285#0      CTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATA 134
consensus_3285#1      CTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATA 240
                      ************************************************************

consensus_3285#0      TCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATA 194
consensus_3285#1      TCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTA 300
                      ********************************************************* **

consensus_3285#0      GGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACT 254
consensus_3285#1      GGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACT 360
                      ************************************************************

consensus_3285#0      TGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTG 314
consensus_3285#1      TGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTG 420
                      ************************************************************

consensus_3285#0      GAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGC 374
consensus_3285#1      GAAGCATTACGATCACAGTTAC-------------------------------------- 442
                      **********************                                      

consensus_3285#0      TCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAAT 434
consensus_3285#1      ------------------------------------------------------------
                                                                                  

consensus_3285#0      TTGGTCTCCCCTTGTCTCGTCCTCT 459
consensus_3285#1      -------------------------