cluster # 329

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Oryza sativa
cluster # 329 cluster # 329 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_329#0 length = 622 sequences # 1

consensus_329#1 length = 536 sequences # 1

consensusID : consensus_329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGATTTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTATTTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCAATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAAAATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCTGGGCCGTTTTTTCACAACCCCG]

[+] EMBL CA755685             [ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGATTTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTATTTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCAATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAAAATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCTGGGCCGTTTTTTCACAACCCCG]




>consensus_329#0
ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTA
AATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTG
CACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGAT
TCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGAT
TTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTAT
TTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACA
TGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATT
TTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCA
ATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAA
AATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCT
GGGCCGTTTTTTCACAACCCCG

consensusID : consensus_329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGATTCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGATTTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGATTTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTCTGTTGTGAATTTCCTATGTGAATCTATNAATCAATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA755616             [ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGATTCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGATTTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGATTTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTCTGTTGTGAATTTCCTATGTGAATCTATNAATCAATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_329#1
ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTG
CCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTT
TCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGATTCGGTCATGGCGGAT
TCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGATTTGGCCGTGGTGGAT
TCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGATTTTTTTAAGTATTCT
GATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACATGCTTTTAGATTTAT
ACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATTTTCTGTCGATATGTT
ATTCTATTCTCTGTTGTGAATTTCCTATGTGAATCTATNAATCAATTATCTTGAATGAAT
AANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_329#0      ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTA 60
consensus_329#1      ---------------ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTA 45
                                    ******* ***** *******************************

consensus_329#0      AATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTG 120
consensus_329#1      AATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTG 105
                     ******************************** ***************************

consensus_329#0      CACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGAT 180
consensus_329#1      CACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGAT 165
                     ************************* ****** **************  ****** ****

consensus_329#0      TCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGAT 240
consensus_329#1      TCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGAT 225
                     ****** *** ******************************** ****************

consensus_329#0      TTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTAT 300
consensus_329#1      TTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGAT 285
                     **** * ********* ** ***** ***************** ** *****  *   **

consensus_329#0      TTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACA 360
consensus_329#1      TTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACA 345
                     *********** ***************************** ******************

consensus_329#0      TGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATT 420
consensus_329#1      TGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATT 405
                     ************************************ ***** *****************

consensus_329#0      TTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCA 480
consensus_329#1      TTCTGTCGATATGTTATTCTATTCTCTGTTGTG-AATTTCCTATGTGAATCTATNAATCA 464
                     ************************* ** ** * ******************** *****

consensus_329#0      ATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAA 540
consensus_329#1      ATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNN 524
                     ****************** ********* **                             

consensus_329#0      AATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCT 600
consensus_329#1      NNNNNNNNNNNN------------------------------------------------ 536
                                                                                 

consensus_329#0      GGGCCGTTTTTTCACAACCCCG 622
consensus_329#1      ----------------------