cluster # 3291

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Oryza sativa
cluster # 3291 cluster # 3291 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3291#0 length = 397 sequences # 1

consensus_3291#1 length = 207 sequences # 1

consensusID : consensus_3291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [TTTTTTTAAAATCCTATTTTTGGGGGTTTTTTAGCCCGAACTTTTTTTTTACCTTTTCCTACCCCACCATTATTGGAATACCTTTACCATTAAACCCGCCCGAAAAGGAAGGAAAAAAATATTTCCTTTTTTTTAAAAACCAAAGCCCTTTAAAATGGTCCTTACCCAACCTGTAAATTAAAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACCCAAAACCAAACTTCCTTCCTTTATTATTAGCCACAATTCCCCCACCCCAAGCCTGAACTTTACTTAATTTCCCCCCAAATTCTTCCAACCCTGGGGCCTTGTAGCCAATAAACTTATTAACCTGCCCCTCCCTAACTTTTCCAAACCCATTATTCCGACCAAAGCCTTCGGGTT]

[+] EMBL CF299384             [TTTTTTTAAAATCCTATTTTTGGGGGTTTTTTAGCCCGAACTTTTTTTTTACCTTTTCCTACCCCACCATTATTGGAATACCTTTACCATTAAACCCGCCCGAAAAGGAAGGAAAAAAATATTTCCTTTTTTTTAAAAACCAAAGCCCTTTAAAATGGTCCTTACCCAACCTGTAAATTAAAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACCCAAAACCAAACTTCCTTCCTTTATTATTAGCCACAATTCCCCCACCCCAAGCCTGAACTTTACTTAATTTCCCCCCAAATTCTTCCAACCCTGGGGCCTTGTAGCCAATAAACTTATTAACCTGCCCCTCCCTAACTTTTCCAAACCCATTATTCCGACCAAAGCCTTCGGGTT]




>consensus_3291#0
TTTTTTTAAAATCCTATTTTTGGGGGTTTTTTAGCCCGAACTTTTTTTTTACCTTTTCCT
ACCCCACCATTATTGGAATACCTTTACCATTAAACCCGCCCGAAAAGGAAGGAAAAAAAT
ATTTCCTTTTTTTTAAAAACCAAAGCCCTTTAAAATGGTCCTTACCCAACCTGTAAATTA
AAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACCCAAAACCAAACTTCCTT
CCTTTATTATTAGCCACAATTCCCCCACCCCAAGCCTGAACTTTACTTAATTTCCCCCCA
AATTCTTCCAACCCTGGGGCCTTGTAGCCAATAAACTTATTAACCTGCCCCTCCCTAACT
TTTCCAAACCCATTATTCCGACCAAAGCCTTCGGGTT

consensusID : consensus_3291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 207
fasta sequence

                              [TTTTTTTTGGGGATTTAACCCGAACTTTTGTTTTACCTTTTCCTACCCCACCAATATTGGAATACCTTTACCATAAAACCCGCCCGAAAAGGGAGGAAAAAAATATTTCCTTTTTGGTTAAAACCAAAGGCCTTGGAAATGGTCCTTACCCAACTGGTAAATTAAAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACC]

[+] EMBL CF293105             [TTTTTTTTGGGGATTTAACCCGAACTTTTGTTTTACCTTTTCCTACCCCACCAATATTGGAATACCTTTACCATAAAACCCGCCCGAAAAGGGAGGAAAAAAATATTTCCTTTTTGGTTAAAACCAAAGGCCTTGGAAATGGTCCTTACCCAACTGGTAAATTAAAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACC]




>consensus_3291#1
TTTTTTTTGGGGATTTAACCCGAACTTTTGTTTTACCTTTTCCTACCCCACCAATATTGG
AATACCTTTACCATAAAACCCGCCCGAAAAGGGAGGAAAAAAATATTTCCTTTTTGGTTA
AAACCAAAGGCCTTGGAAATGGTCCTTACCCAACTGGTAAATTAAAATTTTTTACCTTTT
TTTTTTTGGTTTTTTATTCACCTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3291#0      TTTTTTTAAAATCCTATTTTTGGGGGTTTTTTAGCCCGAACTTTTTTTTTACCTTTTCCT 60
consensus_3291#1      -------------TTTTTTTTGGGGAT---TTAACCCGAACTTTTGTTTTACCTTTTCCT 44
                                    * ********* *   *** *********** **************

consensus_3291#0      ACCCCACCATTATTGGAATACCTTTACCATTAAACCCGCCCGAAAAGGAAGGAAAAAAAT 120
consensus_3291#1      ACCCCACCAATATTGGAATACCTTTACCATAAAACCCGCCCGAAAAGGGAGGAAAAAAAT 104
                      ********* ******************** ***************** ***********

consensus_3291#0      ATTTCCTTTTTTTTAAAAACCAAAGCCCTTTAAAATGGTCCTTACCCAACCTGTAAATTA 180
consensus_3291#1      ATTTCCTTTTTGGTTAAAACCAAAGGCCTTGGAAATGGTCCTTACCCAACTGGTAAATTA 164
                      ***********  * ********** ****  ******************  ********

consensus_3291#0      AAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACCCAAAACCAAACTTCCTT 240
consensus_3291#1      AAATTTTTTACCTTTTTTTTTTTGGTTTTTTATTCACCTTACC----------------- 207
                      *******************************************                 

consensus_3291#0      CCTTTATTATTAGCCACAATTCCCCCACCCCAAGCCTGAACTTTACTTAATTTCCCCCCA 300
consensus_3291#1      ------------------------------------------------------------
                                                                                  

consensus_3291#0      AATTCTTCCAACCCTGGGGCCTTGTAGCCAATAAACTTATTAACCTGCCCCTCCCTAACT 360
consensus_3291#1      ------------------------------------------------------------
                                                                                  

consensus_3291#0      TTTCCAAACCCATTATTCCGACCAAAGCCTTCGGGTT 397
consensus_3291#1      -------------------------------------