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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1592 fasta sequence
[CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCACCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCTCGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCGGCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCCGCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAACGCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCGTGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCCGGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAATGGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAAGAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTTCAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCCAAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGGCGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAACTTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCTTGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATCCACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTC]
[+] EMBL AK068120 [CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCACCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCTCGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCGGCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCCGCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAACGCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCGTGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCCGGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAATGGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAAGAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTTCAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCCAAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGGCGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAACTTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCTTGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATCCACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTC]
consensusID : consensus_3311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence
[GGACGAGACAAGGGGGGTGATCTTGAGATTAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGGTACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGATCGATT]
[+] EMBL CA766677 [GGACGAGACAAGGGGGGTGATCTTGAGATTAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGGTACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGATCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3311#0 CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCA 60
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 CCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCT 120
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 CGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCG 180
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCC 240
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAAC 300
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCG 360
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 TGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCC 420
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAAT 480
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAA 540
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 GAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTT 600
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 CAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCC 660
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 AAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGG 720
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 CGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAAC 780
consensus_3311#1 ------------------------------------------------------------
consensus_3311#0 TTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCT 840
consensus_3311#1 -------------------------------------GGACGAGACAAGGGGGGTGATCT 23
**** ********
consensus_3311#0 TGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCT 900
consensus_3311#1 TGAGATT-AAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCT 82
******* ****************************************************
consensus_3311#0 TTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCA 960
consensus_3311#1 TTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCA 142
************************************************************
consensus_3311#0 AGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGC 1020
consensus_3311#1 AGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGC 202
************************************************************
consensus_3311#0 TGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTA 1080
consensus_3311#1 TGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTA 262
************************************************************
consensus_3311#0 TCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATC 1140
consensus_3311#1 TCCTGCTGAG-------------------------------------------------- 272
**********
consensus_3311#0 CACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACG 1200
consensus_3311#1 ------------------------------------TTCTAACTGAGAAGAAAAGCGACG 296
************************
consensus_3311#0 ACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGA 1260
consensus_3311#1 ACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGA 356
************************************************************
consensus_3311#0 AAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGA 1320
consensus_3311#1 AAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGA 416
************************************************************
consensus_3311#0 TGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTA 1380
consensus_3311#1 TGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTA 476
************************************************************
consensus_3311#0 CGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGA 1440
consensus_3311#1 CGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGA 536
************************************************************
consensus_3311#0 ACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCAT 1500
consensus_3311#1 ACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCAT 596
************************************************************
consensus_3311#0 ATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTT 1560
consensus_3311#1 ATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTT 656
************************************************************
consensus_3311#0 TGCTTCGATTAATCAAGACTTCAAGAGAGTTC---------------------------- 1592
consensus_3311#1 TGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGG 716
********************************
consensus_3311#0 ------------------------------------------------------------
consensus_3311#1 TACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGA 776
consensus_3311#0 ------
consensus_3311#1 TCGATT 782
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||