These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1592 fasta sequence [CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCACCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCTCGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCGGCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCCGCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAACGCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCGTGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCCGGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAATGGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAAGAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTTCAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCCAAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGGCGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAACTTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCTTGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATCCACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTC] [+] EMBL AK068120 [CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCACCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCTCGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCGGCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCCGCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAACGCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCGTGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCCGGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAATGGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAAGAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTTCAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCCAAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGGCGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAACTTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCTTGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATCCACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTC] consensusID : consensus_3311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [GGACGAGACAAGGGGGGTGATCTTGAGATTAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGGTACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGATCGATT] [+] EMBL CA766677 [GGACGAGACAAGGGGGGTGATCTTGAGATTAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCTTTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCAAGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGCTGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTATCCTGCTGAGTTCTAACTGAGAAGAAAAGCGACGACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGAAAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGATGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTACGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGAACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCATATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTTTGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGGTACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGATCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3311#0 CACGCCGTTCCGTTTCCTCATCCAAACTACACGCACTACCTCAACGCCGACGACGACTCA 60 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 CCCCGGCCGGGTTTCGTCTCGCCGGCGGCGGCGCGAGGCCCGCGAGCTCGAGCTCGAGCT 120 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 CGGCAGCGGAAGCTTCGGGTAGTAGTAGCAGCGGCCGTTAAGACTTCTCTCCTGCCGCCG 180 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GCAGCGGCACACAGCGGAGATGCTCCCGGCCCTTCTCCCCGGCTGCCTCGCCGCGCCCCC 240 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GCCCCCGCCGCCGCTTGTCACCACCAGCAGCACCGCATCCCCTAGCGCGCACCTCAGAAC 300 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GCTCCGGCTCCCCTCTGGCCTTGCGGTATCCCGACGCGCGGGCTTCGGGGAGGCCGCGCG 360 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 TGCAGCGGCCACCGAGCGAGGCGCCATCGAGGAGGAGGAGGAGGAGGAGGAGGGGTTCCC 420 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GGAGTGGGGGAACGGCGACGAGGATGAGTACGACCACGACCCGGAGATCGGCGACATAAT 480 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GGGGGAGTACTTCGACGACCCCAACAAAGCCCAGTCTCGCATGGAGGAGAGGATAAAGAA 540 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 GAAGCGGCACAAGATCGTGCAGGCCAAGACCGGCTCACCCAACCCCATGAAGGTCGTCTT 600 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 CAACAAGTTTGACTTCTCCAATTCGTACATATGGTTCGAGTTCTACCATGCTTTACTGCC 660 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 AAAAGATGTGACCTTAATTTGCGATGCTCTGCGGTCATGGCATATAGTTGGGCGCCTGGG 720 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 CGGGTGCAATTCTATGAATATGCAGCTATCACAGTTGCCTTTAGACTGTCAAAGACCAAC 780 consensus_3311#1 ------------------------------------------------------------ consensus_3311#0 TTATGATGCTCTTGAAGGAGCGAATACCACACCAACATCCTTTTACAATATTGGTGATCT 840 consensus_3311#1 -------------------------------------GGACGAGACAAGGGGGGTGATCT 23 **** ******** consensus_3311#0 TGAGATTCAAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCT 900 consensus_3311#1 TGAGATT-AAGATAATATAGCACGTGTATGGGTAGACATTGGTATTCACGAACCGTTGCT 82 ******* **************************************************** consensus_3311#0 TTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCA 960 consensus_3311#1 TTTGGACATCCTGCTTAATGCATTAACGACCATAAATTCAGATCATGTGGGCATTAAGCA 142 ************************************************************ consensus_3311#0 AGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGC 1020 consensus_3311#1 AGTGCAGTTTGGAGGGAGTGAATTTCAGAACTGGAGCGAGGACTTGAAAACGGAAGAAGC 202 ************************************************************ consensus_3311#0 TGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTA 1080 consensus_3311#1 TGGATATAGTGTCCACAAAATTTAGAAAGCCTAGTCCTATTATAGCAGAAGCAGCCGCTA 262 ************************************************************ consensus_3311#0 TCCTGCTGAGGTGCTGATATAGTGCTATAGCACGGATCCAATGTAGCTTCCTGAATCATC 1140 consensus_3311#1 TCCTGCTGAG-------------------------------------------------- 272 ********** consensus_3311#0 CACCTCACAAGGGCTTCAACCGCTATGATCTTGCAGTTCTAACTGAGAAGAAAAGCGACG 1200 consensus_3311#1 ------------------------------------TTCTAACTGAGAAGAAAAGCGACG 296 ************************ consensus_3311#0 ACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGA 1260 consensus_3311#1 ACACCATCCTTAAGCCTGAAAAGTTTGTTGCCATTTTCCTGCAAAGAACCTTTGCTTGGA 356 ************************************************************ consensus_3311#0 AAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGA 1320 consensus_3311#1 AAAGGTTGCCTATTATTATGCAAAGAAGCCAGCCCATCAAGATGCAAATAGATCCTAAGA 416 ************************************************************ consensus_3311#0 TGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTA 1380 consensus_3311#1 TGAGTGAAGGTGCGCATGATTTCTTCAATCTCATCTACTTGGAATATAGGCAACAAAGTA 476 ************************************************************ consensus_3311#0 CGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGA 1440 consensus_3311#1 CGGTGATTGATAAGATATAATGGCTTAGTGGTGCACGAGTCACTCACAGACCCTGATTGA 536 ************************************************************ consensus_3311#0 ACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCAT 1500 consensus_3311#1 ACAATATGAAAAGCCAGCCAGCCTTGTGAAGTTGTGAGACTCAACTCAATGAAGCAGCAT 596 ************************************************************ consensus_3311#0 ATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTT 1560 consensus_3311#1 ATGTGTTTATTATTAAACTATTTAAGCAAGGGTTAATTTGGAGAGTTGTTACAGAAATTT 656 ************************************************************ consensus_3311#0 TGCTTCGATTAATCAAGACTTCAAGAGAGTTC---------------------------- 1592 consensus_3311#1 TGCTTCGATTAATCAAGACTTCAAGAGAGTTCAGAAGTAGTATAACATTTTTCACTGTGG 716 ******************************** consensus_3311#0 ------------------------------------------------------------ consensus_3311#1 TACACAGATTATTGTCATAGGCGATGNTTGTAGGATTTTTCACATAAATTTTCGAAAGGA 776 consensus_3311#0 ------ consensus_3311#1 TCGATT 782 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||