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Oryza sativa
cluster # 3316 cluster # 3316       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3316#0 length = 733 sequences # 1  
consensus_3316#1 length = 485 sequences # 1  

consensusID : consensus_3316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence
                              [CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT]

[+] EMBL AK073516             [CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT]


>consensus_3316#0 CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTG GCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGG ATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCG GATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCG TCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGAC GACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTC CTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA GCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCC TGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCT GTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGA TTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGA TTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAG TTTGAAATTTGAT



consensusID : consensus_3316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence
                              [CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT]

[+] EMBL CA766712             [CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT]


>consensus_3316#1 CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGG GCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCG CGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCT TCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTG ACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCA GCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGAT GCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGG GTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCG AATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3316#0      CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTG 60
consensus_3316#1      ------------------------------------------------------------
                                                                                  

consensus_3316#0      GCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGG 120
consensus_3316#1      ------------------------------------------------------------
                                                                                  

consensus_3316#0      ATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCG 180
consensus_3316#1      ------------------------------------------------------------
                                                                                  

consensus_3316#0      GATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCG 240
consensus_3316#1      ----------CGAGAC-AAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCA 49
                                ** *** ***********  *** ******* ************** ** 

consensus_3316#0      TCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGAC 300
consensus_3316#1      TCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGAC 109
                      ** ***** **** ******************************** *******  ****

consensus_3316#0      GACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTC 360
consensus_3316#1      GACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTC 169
                      **************  ****  ************** ********** ************

consensus_3316#0      CTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 420
consensus_3316#1      TTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 229
                       * ********************** **********************************

consensus_3316#0      GCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCC 480
consensus_3316#1      GCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCC 289
                      ******* ****  ******* ********** **** **********************

consensus_3316#0      TGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCT 540
consensus_3316#1      TAAACAAGGCAGCGGC--------GGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTT 341
                      * ******** * ***        ******* ****** **** ************** *

consensus_3316#0      GTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGA 600
consensus_3316#1      GCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGA 401
                      * **************** ********* ***** *************************

consensus_3316#0      TTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGA 660
consensus_3316#1      TTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGA 461
                      *********  * *******  ******* ********** *** ***************

consensus_3316#0      TTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAG 720
consensus_3316#1      TTTGGGATGTGAATTGGCGAATGT------------------------------------ 485
                      ***************** ******                                    

consensus_3316#0      TTTGAAATTTGAT 733
consensus_3316#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)