These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT] [+] EMBL AK073516 [CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTGGCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGGATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCGGATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCGTCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGACGACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTCCTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCCTGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCTGTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGATTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGATTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAGTTTGAAATTTGAT] consensusID : consensus_3316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT] [+] EMBL CA766712 [CGAGACAAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCATCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGACGACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTCTTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAAGCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCCTAAACAAGGCAGCGGCGGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTTGCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGATTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGATTTGGGATGTGAATTGGCGAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3316#0 CTCTCCCTTAATCATGGGTGGTGTGCGGCGGCAAGGATAGCTGAGGTGGCAAAGCTCGTG 60 consensus_3316#1 ------------------------------------------------------------ consensus_3316#0 GCGCGTGGCGGCGGCGCGACGGGGGCTTGCGGCAGTGGCGCGCGGGCGGCTCACGGCCGG 120 consensus_3316#1 ------------------------------------------------------------ consensus_3316#0 ATCCGCCGCTGACGCCGACGGTGGAGGTCGGATCCGCCGCCGCGATGACGTTGGAGGCCG 180 consensus_3316#1 ------------------------------------------------------------ consensus_3316#0 GATCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGTTGGTGCGGATCCGCCAGCG 240 consensus_3316#1 ----------CGAGAC-AAGGGGGAGGCTAACGGGGAGGGTGGGTGCGGATCCGCCGGCA 49 ** *** *********** *** ******* ************** ** consensus_3316#0 TCAGTGCTCGGGCTGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGCGGTGGACGACGAC 300 consensus_3316#1 TCGGTGCTTGGGCGGTCCTTCACGGCGGTGAAGGAGGTGGATCCAGTGGTGGACAGCGAC 109 ** ***** **** ******************************** ******* **** consensus_3316#0 GACGGCTCCCGCGACGACGAAGACGGCTACCGTGACGATGACAACGATGGCTACGGCTTC 360 consensus_3316#1 GACGGCTCCCGCGATAACGACAACGGCTACCGTGACAATGACAACGACGGCTACGGCTTC 169 ************** **** ************** ********** ************ consensus_3316#0 CTTGCGACCCTTCTTGCTCGCCGGCTCGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 420 consensus_3316#1 TTGGCGACCCTTCTTGCTCGCCGGCACGCCGCTGTACCGCCACAAGGTGCCTCAAGGGAA 229 * ********************** ********************************** consensus_3316#0 GCCCGCTTGTGATGATGGTGATGGTCGTCGCCACCGCCGTGTGGAAGTTCATGGCGTTCC 480 consensus_3316#1 GCCCGCTCGTGACAATGGTGAAGGTCGTCGCCGCCGCTGTGTGGAAGTTCATGGCGTTCC 289 ******* **** ******* ********** **** ********************** consensus_3316#0 TGAACAAGGCGGTGGCCACGGCGAGGTGTCGTGGGTGGCGGCCAAGGAGGTGGTGCAGCT 540 consensus_3316#1 TAAACAAGGCAGCGGC--------GGTGTCGCGGGTGGTGGCCGAGGAGGTGGTGCAGTT 341 * ******** * *** ******* ****** **** ************** * consensus_3316#0 GTAGCGATTGGAGGAGGACGCCGGAGTTTACGCTACGTCGAGTCCTCCATGGATTTGGGA 600 consensus_3316#1 GCAGCGATTGGAGGAGGATGCCGGAGTTGACGCTGCGTCGAGTCCTCCATGGATTTGGGA 401 * **************** ********* ***** ************************* consensus_3316#0 TTTTGGGATTAGGGATTGGGGATTTTGGGGTTTTTTTTTTGCAGGAATGTGAATTGTGGA 660 consensus_3316#1 TTTTGGGATGGGTGATTGGGTTTTTTGGGTTTTTTTTTTTCCAGAAATGTGAATTGTGGA 461 ********* * ******* ******* ********** *** *************** consensus_3316#0 TTTGGGATGTGAATTGGGGAATGTGAATTGTGGAGTAGATTTTGAAACGAGAACATGAAG 720 consensus_3316#1 TTTGGGATGTGAATTGGCGAATGT------------------------------------ 485 ***************** ****** consensus_3316#0 TTTGAAATTTGAT 733 consensus_3316#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||