These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [GACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCAGCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATGGTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGAGGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTCCGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATGGCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGACCGTCG] [+] EMBL AU069937 [GACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCAGCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATGGTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGAGGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTCCGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATGGCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGACCGTCG] consensusID : consensus_3320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCGACAGNTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGGGAGNGAATATACCGGTACGCCGGGTGCAGCCCGGTAGCTTCGTCGTCGCCCGCNTCTACCTNGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNACGCAGCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATGGTCGCCGNCAAGTTCATGGNCGACATACAC] [+] EMBL OSS14409A [ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCGACAGNTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGGGAGNGAATATACCGGTACGCCGGGTGCAGCCCGGTAGCTTCGTCGTCGCCCGCNTCTACCTNGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNACGCAGCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATGGTCGCCGNCAAGTTCATGGNCGACATACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3320#0 -----------------------------------------------------------G 1 consensus_3320#1 ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCG 60 * consensus_3320#0 ACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATA 61 consensus_3320#1 ACAGN-TTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACG-GGAGNGAATA 118 **** ******************************************* **** * *** consensus_3320#0 TACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGC 121 consensus_3320#1 TACCGGTACGCCGGGTGCAGCCCGGTA-GCTTCGTCGTCGCCCGCNTCTACCTNGACCGC 177 ************************* ***************** ******* ****** consensus_3320#0 CTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCA 181 consensus_3320#1 CTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNAC--GCA 235 ******************************** *********** ****** *** consensus_3320#0 GCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATG 241 consensus_3320#1 GCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATG 295 ***************** ************** ****** ********* ********** consensus_3320#0 GTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGA 301 consensus_3320#1 GTCGCCGNCAAGTTCATGGNCGACATACAC------------------------------ 325 ******* *********** ********** consensus_3320#0 GGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTC 361 consensus_3320#1 ------------------------------------------------------------ consensus_3320#0 CGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATG 421 consensus_3320#1 ------------------------------------------------------------ consensus_3320#0 GCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGAC 481 consensus_3320#1 ------------------------------------------------------------ consensus_3320#0 CGTCG 486 consensus_3320#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||