cluster # 3320

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Oryza sativa
cluster # 3320 cluster # 3320 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3320#0 length = 486 sequences # 1

consensus_3320#1 length = 325 sequences # 1

consensusID : consensus_3320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [GACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCAGCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATGGTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGAGGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTCCGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATGGCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGACCGTCG]

[+] EMBL AU069937             [GACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCAGCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATGGTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGAGGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTCCGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATGGCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGACCGTCG]




>consensus_3320#0
GACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGAT
ATACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCG
CCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGC
AGCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCAT
GGTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGG
AGGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTT
CCGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGAT
GGCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGA
CCGTCG

consensusID : consensus_3320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCGACAGNTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGGGAGNGAATATACCGGTACGCCGGGTGCAGCCCGGTAGCTTCGTCGTCGCCCGCNTCTACCTNGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNACGCAGCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATGGTCGCCGNCAAGTTCATGGNCGACATACAC]

[+] EMBL OSS14409A            [ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCGACAGNTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGGGAGNGAATATACCGGTACGCCGGGTGCAGCCCGGTAGCTTCGTCGTCGCCCGCNTCTACCTNGACCGCCTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNACGCAGCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATGGTCGCCGNCAAGTTCATGGNCGACATACAC]




>consensus_3320#1
ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCG
ACAGNTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGGGAGNGAATATA
CCGGTACGCCGGGTGCAGCCCGGTAGCTTCGTCGTCGCCCGCNTCTACCTNGACCGCCTC
GCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNACGCAGCGGC
GGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATGGTCGC
CGNCAAGTTCATGGNCGACATACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3320#0      -----------------------------------------------------------G 1
consensus_3320#1      ACCTTAACACCTTCCCTCCACCATACGCAACGCCATGGAGAGGACGACGACGAGGCGGCG 60
                                                                                 *

consensus_3320#0      ACAGCGTTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACGCGGAGCGGATA 61
consensus_3320#1      ACAGN-TTCCGCGGGCGGACGAGGCCGGAGATCAGCGTGCGGCGGTACG-GGAGNGAATA 118
                      ****  ******************************************* **** * ***

consensus_3320#0      TACCGGTACGCCGGGTGCAGCCCGGCGTGCTTCGTCGTCGCCCGCGTCTACCTCGACCGC 121
consensus_3320#1      TACCGGTACGCCGGGTGCAGCCCGGTA-GCTTCGTCGTCGCCCGCNTCTACCTNGACCGC 177
                      *************************   ***************** ******* ******

consensus_3320#0      CTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCGCCATCGCCATCGCCGCCGGCGACGGCA 181
consensus_3320#1      CTCGCCGGGCGGTCGCCGGAGGAGGAGTCATCNCCATCGCCATCNNCGCCGGNAC--GCA 235
                      ******************************** ***********  ******     ***

consensus_3320#0      GCGGCGGCGGTGTGCGTGGACTCGTACAGCGTGCACCGTCTGCTCATCACCAGCGTCATG 241
consensus_3320#1      GCGGCGGCGGTGTGCGTAGACTCGTACAGCGTTCACCGTNTGCTCATCAACAGCGTCATG 295
                      ***************** ************** ****** ********* **********

consensus_3320#0      GTCGCCGCCAAGTTCATGGACGACATACACTACAACAACGCATACTTCGCGCGCGTGGGA 301
consensus_3320#1      GTCGCCGNCAAGTTCATGGNCGACATACAC------------------------------ 325
                      ******* *********** **********                              

consensus_3320#0      GGCGTGGAGGTGGCGGAGATGAACGGCCTGGAGCTGGAGCTCCTCTTCGCGCTGCGCTTC 361
consensus_3320#1      ------------------------------------------------------------
                                                                                  

consensus_3320#0      CGCCTCAACGTCACGCCGGCGACCTTCGCCACCTACTGCGCCGCGCTCGAGGGCGAGATG 421
consensus_3320#1      ------------------------------------------------------------
                                                                                  

consensus_3320#0      GCGGCGGATGATGGCCCCCTGCCGTCGCCGTCGCCGTCGCCGGAGGAGGAGGGGAATGAC 481
consensus_3320#1      ------------------------------------------------------------
                                                                                  

consensus_3320#0      CGTCG 486
consensus_3320#1      -----