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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1900 fasta sequence
[GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTTCCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATGTGTGTTTTTTTTCTTTTTGGTTGAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCATGGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGATCAGTTTCTTCTTCTTTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGTTCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCAATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGTGATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTTCCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCCGCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATATGAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATTTACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAAACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATTGCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTTCTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATGATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAACCTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGATGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTGCATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAGGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATGGGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTTTGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACTGACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTTTTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTCAATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGCTAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTCATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCACAAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCATCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGGAGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTTTTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA]
[+] EMBL AK107197 [GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTTCCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATGTGTGTTTTTTTTCTTTTTGGTTGAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCATGGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGATCAGTTTCTTCTTCTTTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGTTCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCAATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGTGATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTTCCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCCGCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATATGAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATTTACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAAACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATTGCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTTCTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATGATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAACCTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGATGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTGCATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAGGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATGGGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTTTGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACTGACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTTTTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTCAATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGCTAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTCATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCACAAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCATCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGGAGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTTTTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA]
consensusID : consensus_3324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTTTTCATGTTGCCTTCTACATGTTCAATTTGATTTTTTTTTTCATGGATCGATGGTATATGGTTTTTTTCCTGTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCTCTGTGGTGTCACCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCTTGATGCAGACTAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA]
[+] EMBL AU172734 [ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTTTTCATGTTGCCTTCTACATGTTCAATTTGATTTTTTTTTTCATGGATCGATGGTATATGGTTTTTTTCCTGTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCTCTGTGGTGTCACCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCTTGATGCAGACTAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3324#0 GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTT 60
consensus_3324#1 --ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTT--TTCATGT-TGCC 55
* *** * * * * * ** * ** * ** ** * **
consensus_3324#0 CCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATG---TGTGTTTTTTTTCTT 117
consensus_3324#1 TTCTACATGTTCAATTTGATTTTTT-TTTTCATGGATCGATGGTATATGGTTTTTTTCCT 114
**** ** *** ***** * ***** * *** * ** ******** *
consensus_3324#0 TTTGGTT--GAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCAT 175
consensus_3324#1 GTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCT--CTGT 172
* *** **************** ** ********* **** ******** * * *
consensus_3324#0 GGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTG 235
consensus_3324#1 GGTGTCA-CCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTG 231
**** ** ****** *** ******************************* *********
consensus_3324#0 CCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGAT 295
consensus_3324#1 CCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCT-TGATGCAGAC 290
************************************ *** ** *** * ******
consensus_3324#0 CAGTTTCTTCTTCT-----TTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGT 350
consensus_3324#1 TAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA-- 348
******** * * ****** * **** ** ****** *
consensus_3324#0 TCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCA 410
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 ATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGT 470
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTT 530
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 CCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCC 590
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATAT 650
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATT 710
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAA 770
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 ACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATT 830
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTT 890
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 CTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATG 950
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 ATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAAC 1010
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 CTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGA 1070
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTG 1130
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 CATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAG 1190
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATG 1250
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTT 1310
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACT 1370
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 GACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTT 1430
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTC 1490
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 AATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGC 1550
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTC 1610
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 ATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCAC 1670
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 AAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCA 1730
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGG 1790
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 AGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTT 1850
consensus_3324#1 ------------------------------------------------------------
consensus_3324#0 TTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA 1900
consensus_3324#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||