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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1819 fasta sequence
[GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACACAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGGCCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACAGCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGGCTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTTTTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGACGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGACCGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACGCCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTATCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCACGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCGCGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGATAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTTCACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGACGTGCACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGACTCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCCGCCGGTTCGTGCTCGTCTTCTTCGATGATATTCTAATATACAGCTCGTCTTGGTCGGAGCACCTCCGCCATGTACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCGCCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTGTTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGGAATCTGGATGTTTTTTCAAGGC]
[+] EMBL AK099804 [GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACACAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGGCCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACAGCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGGCTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTTTTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGACGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGACCGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACGCCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTATCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCACGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCGCGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGATAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTTCACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGACGTGCACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGACTCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCCGCCGGTTCGTGCTCGTCTTCTTCGATGATATTCTAATATACAGCTCGTCTTGGTCGGAGCACCTCCGCCATGTACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCGCCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTGTTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGGAATCTGGATGTTTTTTCAAGGC]
consensusID : consensus_3339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence
[GGGGCAAGCTACATTCTCAGCTACTCAGCTTGGAACATAGTAGAAAAATTCATATGAAAACAGATTGGATCTCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTCTCCTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTCGAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCATAGCTCTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACATGTGTCACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGCAGGCAAATCAAGTAATCAGCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGCACAGGCTGCCCCAGAGCCTCGTGCCCCGGCTGCTCATCAGTGTGCTACTGTTTGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACCACACTGAACCAGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGTGATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGNAAAAACATNCAGATTNCAGACACAGGTTGCTGTCACCGACCCACACAAATGTCAGNTGCTCAGTTNCAGATCATAACAGGAAGTGTACCAAAATATATGAGAAAAGGACTCTTATAAGNATGATGNCACATATACCTGGCAACTNCGAAATNAAGCATCA]
[+] EMBL CA766827 [GGGGCAAGCTACATTCTCAGCTACTCAGCTTGGAACATAGTAGAAAAATTCATATGAAAACAGATTGGATCTCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTCTCCTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTCGAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCATAGCTCTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACATGTGTCACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGCAGGCAAATCAAGTAATCAGCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGCACAGGCTGCCCCAGAGCCTCGTGCCCCGGCTGCTCATCAGTGTGCTACTGTTTGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACCACACTGAACCAGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGTGATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGNAAAAACATNCAGATTNCAGACACAGGTTGCTGTCACCGACCCACACAAATGTCAGNTGCTCAGTTNCAGATCATAACAGGAAGTGTACCAAAATATATGAGAAAAGGACTCTTATAAGNATGATGNCACATATACCTGGCAACTNCGAAATNAAGCATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3339#0 GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACA 60
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 CAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGG 120
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 CCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACA 180
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 GCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGG 240
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 CTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTT 300
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 TTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGA 360
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 CGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGAC 420
consensus_3339#1 --------------------------------------------GGGGCAAGCTACATTC 16
**** * ** *
consensus_3339#0 CGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACG 480
consensus_3339#1 TCAGCTACTCAGC----TTGGAACATAGTAGAAAAATTCATATGAAA-ACAGATTGGATC 71
* ** *** * * * * * * * * * * * * * *
consensus_3339#0 CCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTA 540
consensus_3339#1 TCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTC 131
******* ** * *** ** * * * * * * * * ** **
consensus_3339#0 TCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCA 600
consensus_3339#1 TC------CTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTC----- 180
** * * * * *** **** * * * ** ** * * ***
consensus_3339#0 CGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCG 660
consensus_3339#1 -GAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCA--TAGCT 237
* **** * ** ** * * * * * * * ** ***
consensus_3339#0 CGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGA 720
consensus_3339#1 CTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACA 297
* * * *** * * * ** * ** * * ** ** * * * *
consensus_3339#0 TAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTT 780
consensus_3339#1 TGTGT-------CACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGC 350
* ** * * *** * ** * * * * * ** * ***
consensus_3339#0 CACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGA-CGTGC 839
consensus_3339#1 AGGCAAATCAAGTAATCA--GCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGC 408
*** * ** * **** * * ** * *** * * * ** * **
consensus_3339#0 ACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGAC 899
consensus_3339#1 ACAGGC---TGCCCCAGAGCCTC--GTGCCCC---GGCTGCTCATCAGTGTGCTACTGTT 460
*** * * ** * ** * *** * * * ** ** ** * *
consensus_3339#0 TCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCC 959
consensus_3339#1 TGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACC--ACACTGAACC 518
* ** * * **** ** ** ** ** **** * * * **
consensus_3339#0 GCCGGTTCGTGCTCGTCTTCTTCGATGATATT-CTAATATACAGCTCGTCTTGGTCGGAG 1018
consensus_3339#1 AGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGT 578
* * * * * * * * * * * ** * ** * *** ****
consensus_3339#0 CACCTCCGCCATG-TACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAA 1077
consensus_3339#1 GATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGN 638
* * * * * * * * * * ** * *** * * ***
consensus_3339#0 GCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAG 1137
consensus_3339#1 AAAAAC--ATNCAGATTNCAGACACAGGTTGCTGTCA---CCGACCCACACAAATGTCAG 693
* * ** * * * * ** * * ** * * ** ***
consensus_3339#0 TCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGG 1197
consensus_3339#1 NTGCTCAG-TTNCAGATCATAACAGGAAGTGTACCAAAATATATGA---GAAAAGGACTC 749
*** ** * *** *** * * * * * ** ** * * **
consensus_3339#0 GCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCG 1257
consensus_3339#1 TTATAAGNATGATGNCACATATACCTGGCAACTNCG--AAATNAAGCATCA--------- 798
* * ** ** *** * * ** **
consensus_3339#0 CCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGG 1317
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 TCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATA 1377
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 GCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCA 1437
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 AGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCG 1497
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 ACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACT 1557
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 TCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTC 1617
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 GCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCG 1677
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 TATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTG 1737
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 TTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGG 1797
consensus_3339#1 ------------------------------------------------------------
consensus_3339#0 AATCTGGATGTTTTTTCAAGGC 1819
consensus_3339#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||