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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTAGATAATGGATTAATTAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTTTGCTTTGTCGCTGACAGCAGTTCAGGTTTTCCTGACAAAGTTCTACTCCTACATGGAAAACTATATTATTTCAGTTGAGAGAATAAAGCAGTATATGCACCTTCCACCAAAGCCTCCAGCCATTATACCAGAGAATAGGGCTCCAAGTTCATGGCCACAGGAGGGACAAATTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGCCTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAGGGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACTTTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATCATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG]
[+] EMBL CA760385 [TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTAGATAATGGATTAATTAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTTTGCTTTGTCGCTGACAGCAGTTCAGGTTTTCCTGACAAAGTTCTACTCCTACATGGAAAACTATATTATTTCAGTTGAGAGAATAAAGCAGTATATGCACCTTCCACCAAAGCCTCCAGCCATTATACCAGAGAATAGGGCTCCAAGTTCATGGCCACAGGAGGGACAAATTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGCCTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAGGGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACTTTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATCATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG]
consensusID : consensus_334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[TTTTTTTTTTTGGATGGACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGGTCTCAAGCTCTCCTTTGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAAAGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCTCCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGGGGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCCCCCCCCAAAAAAAAGGGGTCTTTTGTGGTTCCCCAAAGAAGGGAAAATATTTGTGGAAATTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAACCCCGCGAGAAGTGGGG]
[+] EMBL CA760696 [TTTTTTTTTTTGGATGGACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGGTCTCAAGCTCTCCTTTGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAAAGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCTCCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGGGGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCCCCCCCCAAAAAAAAGGGGTCTTTTGTGGTTCCCCAAAGAAGGGAAAATATTTGTGGAAATTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAACCCCGCGAGAAGTGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_334#0 TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAG 60
consensus_334#1 ------------------------------------TTTTTTTTTTTGGATGGACATAAG 24
* * ** *** *******
consensus_334#0 CCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACG 120
consensus_334#1 CCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACG 84
************************************* **********************
consensus_334#0 CTTCCAGTTTTTTTTT--AGATAATGGATTAATTAAAA--CCCGGCCTCTACATCCAACA 176
consensus_334#1 CTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACA 144
**************** **************** ** ********************
consensus_334#0 AGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTT 236
consensus_334#1 AGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGG-TCTCAAGCTCTCCTT 203
********************** ********************* ***** ********
consensus_334#0 TGCTTTGTCGCTGACAGCAGTTCAGGTTTT-CCTGACAAAGTTCT-ACTCCTACATGGAA 294
consensus_334#1 TGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAA 263
******* **** *********** ***** ************** ******** *****
consensus_334#0 A-------ACTATATTATTTCAGTTGAGAGAAT--AAAGCAGTATAT----GCACCTTCC 341
consensus_334#1 AGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCT 323
* * * **** ** * ** **** ** ** ** ** * * ** ***
consensus_334#0 ACCAAAGCCTCCAGCCA--TTATACCAGAGAATAGGGC-TCCAAGTTCAT--GGCCACAG 396
consensus_334#1 CCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGG 383
***** * ** *** ** **** * ** ***** *** **** * **** * *
consensus_334#0 GAGGGACAAA---TTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGC 453
consensus_334#1 GGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCC 443
* *** *** **** * * * * * * * * * *** * *
consensus_334#0 CTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAG 513
consensus_334#1 CCCCCCAAAAAAAAGGGGTCTTTTGTG-GTTCCCCAAAGAAGGGAAAATATTTGTGGAAA 502
* * ***** ** *** ** ** * * ***** ** * *
consensus_334#0 GGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACT 573
consensus_334#1 TTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAA 562
* * *** ** * * * ** * * * * * * *
consensus_334#0 TTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATC 633
consensus_334#1 CCCCGCGAGAAGTGGGG------------------------------------------- 579
* *** ** *
consensus_334#0 ATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG 692
consensus_334#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||