|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1649 fasta sequence
[CGCACGCATTTTTGCCCCCACGCCGCCGCCGAGGATGGAGTCCAACGCCGAGAAGCTTCGTGGTCTCACCATCACCTCGCTGGATGAGGAAGACGACGAGCCCGAACTGCCCCACCGATCCCCACCCGCCAGCGGCGGCGGCGGAGGCGGCGGCGCGGGCTACGAGGACGACGATGAGGAGGAGGAGGAAGAGGCGGAGGTGACGCTTGGTTTTCTGGAGAAGCCGAAGCACCCGGGCCTCCTCCTCCGCCACCTGTTCCCTAGCAAGGCCGGAGGCATCCCGGCGTGGTTGGATCCTGTGAACTTGCCATCGGGGAACTCGCGTTGCTGCGGCTTCTGCGGCGAGCCCCTGCAGTTCGTCCTCCAGATATATGCACCGATTGAGGACAATGCGGCATCATTTCACCGCACTTTGTTCATGTTCATGTGCCCGTCAATGGCATGCTTACTCCGAGACCAGCACGACCAGTGGAAACATAGACAAGGCAATCCGTGTAGAAGCGTGAAGGTTTTCCGGTGCCAGCTTCCCCGTAGTAATGCCTTCTACTCAAGTGAACCACCAAAGCACAATGATTCTGACAAGCCACTATGTCCAGGAGCTCCTGTCTGCCATTGGTGCGGTACATGGAAAGGTGATAAACTCTGTAGTAGCTGCAAGAAAGCACGCTACTGCTCTGAGAAGCATCAGACACTGCACTGGCGCTCTGGCCATAAGAGTGATTGCCTACAGTTAATCAGTTCTTCTGAAGCTTCAAGCTCTATTTTTCCTGCTGTAGGAAAAGTTCCTGCTAGCAAATCTTGGCCAGAATATGAGATTGCAATCGACTATGAGGGTGCTTTCAATTCTGACAGTTGTGATGAGAGTAACTCAAAGTCCTTGGTGATGCAAAGACCTGGTAAACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATGCTGGGCGTCTTTTCAAGAGCGGGTCTCAAGAGCACCAAAGCAAGTATTGAGATACTGTCGAGAAGAGAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATATCCCATCATGTAGCTACTGTAGAGGTCCACTATGCTATGAATTTCAGATAATGCCACAGCTGCTTTATTACTTTGGTGTGAAAAATGAGCCAGACTCTCTTGATTGGGCAACAATTGTTGTGTACACATGTAAAGGATCATGCGATCAAAATGTCAGCTACAAGGAGGAATTTGCATGGGTTCAGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCACAGAGTAAGCTTTGTAATGGCCTACAGGGAGCTGGCTGAGATCATCTGCACTCATTTTTGACGTGAAGTCGGGAGCTCAACTGATCAAGACGAGATAGATTTGTTTTCCTCTACTGGGGATTTTTTAGTGGGGTGTGGTTTCGATGATTCCAGGTCAGTTGGTCGTGCAATGTTGAGCAGCGTAGGGCCGTGGTCCCAAATGCTTTGTGCTCGCTACATTGGTTTTGATCTGCTAGACCACTAGGGCCCATTTAGCGCATTTGATAACAAATATATGTGTTCCTTGTGGTCACCACCGTGCTTGGTTTAGTATATCTTTAGTGTTCGTT]
[+] EMBL AK102070 [CGCACGCATTTTTGCCCCCACGCCGCCGCCGAGGATGGAGTCCAACGCCGAGAAGCTTCGTGGTCTCACCATCACCTCGCTGGATGAGGAAGACGACGAGCCCGAACTGCCCCACCGATCCCCACCCGCCAGCGGCGGCGGCGGAGGCGGCGGCGCGGGCTACGAGGACGACGATGAGGAGGAGGAGGAAGAGGCGGAGGTGACGCTTGGTTTTCTGGAGAAGCCGAAGCACCCGGGCCTCCTCCTCCGCCACCTGTTCCCTAGCAAGGCCGGAGGCATCCCGGCGTGGTTGGATCCTGTGAACTTGCCATCGGGGAACTCGCGTTGCTGCGGCTTCTGCGGCGAGCCCCTGCAGTTCGTCCTCCAGATATATGCACCGATTGAGGACAATGCGGCATCATTTCACCGCACTTTGTTCATGTTCATGTGCCCGTCAATGGCATGCTTACTCCGAGACCAGCACGACCAGTGGAAACATAGACAAGGCAATCCGTGTAGAAGCGTGAAGGTTTTCCGGTGCCAGCTTCCCCGTAGTAATGCCTTCTACTCAAGTGAACCACCAAAGCACAATGATTCTGACAAGCCACTATGTCCAGGAGCTCCTGTCTGCCATTGGTGCGGTACATGGAAAGGTGATAAACTCTGTAGTAGCTGCAAGAAAGCACGCTACTGCTCTGAGAAGCATCAGACACTGCACTGGCGCTCTGGCCATAAGAGTGATTGCCTACAGTTAATCAGTTCTTCTGAAGCTTCAAGCTCTATTTTTCCTGCTGTAGGAAAAGTTCCTGCTAGCAAATCTTGGCCAGAATATGAGATTGCAATCGACTATGAGGGTGCTTTCAATTCTGACAGTTGTGATGAGAGTAACTCAAAGTCCTTGGTGATGCAAAGACCTGGTAAACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATGCTGGGCGTCTTTTCAAGAGCGGGTCTCAAGAGCACCAAAGCAAGTATTGAGATACTGTCGAGAAGAGAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATATCCCATCATGTAGCTACTGTAGAGGTCCACTATGCTATGAATTTCAGATAATGCCACAGCTGCTTTATTACTTTGGTGTGAAAAATGAGCCAGACTCTCTTGATTGGGCAACAATTGTTGTGTACACATGTAAAGGATCATGCGATCAAAATGTCAGCTACAAGGAGGAATTTGCATGGGTTCAGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCACAGAGTAAGCTTTGTAATGGCCTACAGGGAGCTGGCTGAGATCATCTGCACTCATTTTTGACGTGAAGTCGGGAGCTCAACTGATCAAGACGAGATAGATTTGTTTTCCTCTACTGGGGATTTTTTAGTGGGGTGTGGTTTCGATGATTCCAGGTCAGTTGGTCGTGCAATGTTGAGCAGCGTAGGGCCGTGGTCCCAAATGCTTTGTGCTCGCTACATTGGTTTTGATCTGCTAGACCACTAGGGCCCATTTAGCGCATTTGATAACAAATATATGTGTTCCTTGTGGTCACCACCGTGCTTGGTTTAGTATATCTTTAGTGTTCGTT]
consensusID : consensus_3341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TGTGATGAGAGTAACTCANAGTCCTTGGTGATGCAAAGACCTGGTNNACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATGCTGGGCGTCTTTTCAAGAACGGGTCTCAAGANCACCAAAGCAAGTATTGAGATACTGTCGAAAANANAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATATCCCATCATGTNGCTACTGTAGANGTCCACTATGCTATGAATTTCAGATAATGCCACAGCTGCTTTATTNCTTTGGTGTGAAAAATGAGCCACACTCTCTTGATTGGGCAACAATTGTTGTGTACACATGTNAAGGATCATGCNATCAAAATGTCNNCTACAAGGANGAATTTGCATGGGTTCNGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCNCAGAANTAAGCTTTGTNATGGCCTACAGGGANCTGGCTGAAATCATCTNCACTCNTTTTTGACTTGAANTCCGGAGCTCNCTGATCCANACNAAATANATTTGTTTTCCCCCNCTGGGGGATTTTTTTANTGGGGGTGTTGGTTTC]
[+] EMBL BE229792 [TGTGATGAGAGTAACTCANAGTCCTTGGTGATGCAAAGACCTGGTNNACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATGCTGGGCGTCTTTTCAAGAACGGGTCTCAAGANCACCAAAGCAAGTATTGAGATACTGTCGAAAANANAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATATCCCATCATGTNGCTACTGTAGANGTCCACTATGCTATGAATTTCAGATAATGCCACAGCTGCTTTATTNCTTTGGTGTGAAAAATGAGCCACACTCTCTTGATTGGGCAACAATTGTTGTGTACACATGTNAAGGATCATGCNATCAAAATGTCNNCTACAAGGANGAATTTGCATGGGTTCNGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCNCAGAANTAAGCTTTGTNATGGCCTACAGGGANCTGGCTGAAATCATCTNCACTCNTTTTTGACTTGAANTCCGGAGCTCNCTGATCCANACNAAATANATTTGTTTTCCCCCNCTGGGGGATTTTTTTANTGGGGGTGTTGGTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3341#0 CGCACGCATTTTTGCCCCCACGCCGCCGCCGAGGATGGAGTCCAACGCCGAGAAGCTTCG 60
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 TGGTCTCACCATCACCTCGCTGGATGAGGAAGACGACGAGCCCGAACTGCCCCACCGATC 120
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CCCACCCGCCAGCGGCGGCGGCGGAGGCGGCGGCGCGGGCTACGAGGACGACGATGAGGA 180
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 GGAGGAGGAAGAGGCGGAGGTGACGCTTGGTTTTCTGGAGAAGCCGAAGCACCCGGGCCT 240
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CCTCCTCCGCCACCTGTTCCCTAGCAAGGCCGGAGGCATCCCGGCGTGGTTGGATCCTGT 300
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 GAACTTGCCATCGGGGAACTCGCGTTGCTGCGGCTTCTGCGGCGAGCCCCTGCAGTTCGT 360
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CCTCCAGATATATGCACCGATTGAGGACAATGCGGCATCATTTCACCGCACTTTGTTCAT 420
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 GTTCATGTGCCCGTCAATGGCATGCTTACTCCGAGACCAGCACGACCAGTGGAAACATAG 480
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 ACAAGGCAATCCGTGTAGAAGCGTGAAGGTTTTCCGGTGCCAGCTTCCCCGTAGTAATGC 540
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CTTCTACTCAAGTGAACCACCAAAGCACAATGATTCTGACAAGCCACTATGTCCAGGAGC 600
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 TCCTGTCTGCCATTGGTGCGGTACATGGAAAGGTGATAAACTCTGTAGTAGCTGCAAGAA 660
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 AGCACGCTACTGCTCTGAGAAGCATCAGACACTGCACTGGCGCTCTGGCCATAAGAGTGA 720
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 TTGCCTACAGTTAATCAGTTCTTCTGAAGCTTCAAGCTCTATTTTTCCTGCTGTAGGAAA 780
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 AGTTCCTGCTAGCAAATCTTGGCCAGAATATGAGATTGCAATCGACTATGAGGGTGCTTT 840
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CAATTCTGACAGTTGTGATGAGAGTAACTCAAAGTCCTTGGTGATGCAAAGACCTGGTAA 900
consensus_3341#1 -------------TGTGATGAGAGTAACTCANAGTCCTTGGTGATGCAAAGACCTGGTNN 47
****************** **************************
consensus_3341#0 ACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATG 960
consensus_3341#1 ACCAGATGATATGATGCAGTCATGGATGGATCAATTTGAGGCTGATGCTGACAACAAATG 107
************************************************************
consensus_3341#0 CTGGGCGTCTTTTCAAGAGCGGGTCTCAAGAGCACCAAAGCAAGTATTGAGATACTGTCG 1020
consensus_3341#1 CTGGGCGTCTTTTCAAGAACGGGTCTCAAGANCACCAAAGCAAGTATTGAGATACTGTCG 167
****************** ************ ****************************
consensus_3341#0 AGAAGAGAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATAT 1080
consensus_3341#1 AAAANANAATGCCAAACCTCTATGGGCGTTATCGGCTGGTTGTCCATCAAATGCCGATAT 227
* ** * *****************************************************
consensus_3341#0 CCCATCATGTAGCTACTGTAGAGGTCCACTATGCTATGAATTTCAGATAATGCCACAGCT 1140
consensus_3341#1 CCCATCATGTNGCTACTGTAGANGTCCACTATGCTATGAATTTCAGATAATGCCACAGCT 287
********** *********** *************************************
consensus_3341#0 GCTTTATTACTTTGGTGTGAAAAATGAGCCAGACTCTCTTGATTGGGCAACAATTGTTGT 1200
consensus_3341#1 GCTTTATTNCTTTGGTGTGAAAAATGAGCCACACTCTCTTGATTGGGCAACAATTGTTGT 347
******** ********************** ****************************
consensus_3341#0 GTACACATGTAAAGGATCATGCGATCAAAATGTCAGCTACAAGGAGGAATTTGCATGGGT 1260
consensus_3341#1 GTACACATGTNAAGGATCATGCNATCAAAATGTCNNCTACAAGGANGAATTTGCATGGGT 407
********** *********** *********** ********* **************
consensus_3341#0 TCAGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCA 1320
consensus_3341#1 TCNGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTATTTGCCCCCN 467
** ********************************************************
consensus_3341#0 CAGA-GTAAGCTTTGTAATGGCCTACAGGGAGCTGGCTGAGATCATCTGCACTCATTTTT 1379
consensus_3341#1 CAGAANTAAGCTTTGTNATGGCCTACAGGGANCTGGCTGAAATCATCTNCACTCNTTTTT 527
**** ********** ************** ******** ******* ***** *****
consensus_3341#0 GACGTGAAGTCGGGAGCTCAACTGATCAAGACGAGATAGATTTGTTTTCCTCTACTGGGG 1439
consensus_3341#1 GACTTGAANTCCGGAGCTCN-CTGATCCANACNAAATANATTTGTTTTCCCCCNCTGGGG 586
*** **** ** ******* ****** * ** * *** *********** * ******
consensus_3341#0 A--TTTTTTAGTGGGG-TGT-GGTTTCGATGATTCCAGGTCAGTTGGTCGTGCAATGTTG 1495
consensus_3341#1 GATTTTTTTANTGGGGGTGTTGGTTTC--------------------------------- 613
******* ***** *** ******
consensus_3341#0 AGCAGCGTAGGGCCGTGGTCCCAAATGCTTTGTGCTCGCTACATTGGTTTTGATCTGCTA 1555
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 GACCACTAGGGCCCATTTAGCGCATTTGATAACAAATATATGTGTTCCTTGTGGTCACCA 1615
consensus_3341#1 ------------------------------------------------------------
consensus_3341#0 CCGTGCTTGGTTTAGTATATCTTTAGTGTTCGTT 1649
consensus_3341#1 ----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||