These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1204 fasta sequence [TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAAGGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGCCGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCTCCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCCCGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCGCGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCAGGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCGAGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCATCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCCCCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCTCCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCCCAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATGGAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATGAGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATTATGAGGAGGACAAGGATGGCTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGATGATGA] [+] EMBL AK108144 [TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAAGGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGCCGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCTCCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCCCGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCGCGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCAGGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCGAGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCATCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCCCCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCTCCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCCCAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATGGAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATGAGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATTATGAGGAGGACAAGGATGGCTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGATGATGA] consensusID : consensus_3345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [NCCTCCTNCTTTTNACGTNCAAGACCNTTGNTNCACCAAANCCCNTCACCCAAGNCANAGGGTTCCTCTCNTTTTCCACCAAGGAATCAATCCAATCAAAAGGGAGGANAACCCACCAGGGAGGGAGTGGGGGNGNGAATCAATGGAGGANGAAGATGAGAGGAGAGAGAGGGGTTTGTTTGGTGGAGGAGNATTATTGGTAGGGGGGCACTAATTATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGATGATGATGATGATGA] [-] EMBL BE229218 [NCCTCCTNCTTTTNACGTNCAAGACCNTTGNTNCACCAAANCCCNTCACCCAAGNCANAGGGTTCCTCTCNTTTTCCACCAAGGAATCAATCCAATCAAAAGGGAGGANAACCCACCAGGGAGGGAGTGGGGGNGNGAATCAATGGAGGANGAAGATGAGAGGAGAGAGAGGGGTTTGTTTGGTGGAGGAGNATTATTGGTAGGGGGGCACTAATTATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGATGATGATGATGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3345#0 TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAA 60 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 GGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGC 120 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 CGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCT 180 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 CCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCC 240 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 CGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCG 300 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 CGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCA 360 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 GGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCG 420 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 AGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCA 480 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 TCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCC 540 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 CCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCT 600 consensus_3345#1 --------------------------------------------------------NCCT 4 *** consensus_3345#0 CCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCC 660 consensus_3345#1 CCTNCTT-TTNACGT--NCAAGACC----NTTGNTN--CACCAAANCCCNTCACCCAAGN 55 *** ** * * ** ***** * *** * **** ** ** * *** consensus_3345#0 CAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATG 720 consensus_3345#1 CAN--------AGGGTTCCTCTC---NTTTTCCACCAAGGAATCAA-TCCAATCAAAAGG 103 ** ******** * ** ******** * ***** *********** * consensus_3345#0 GAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATG 780 consensus_3345#1 GAGGANAACCCACCA----GGGAGGGAG-TGGGGGNGNGAATCAATGGAGGANGAAGATG 158 ** ** ** ** ** * ** *** * * * ************* ******* consensus_3345#0 AGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATT 840 consensus_3345#1 AGAGGAGAGAGAGGGGTT-TGTTTGGTGGAGGAGNATTATTGGTAGG-GGGGCACTAATT 216 **************** * *** *********** ************ * ********** consensus_3345#0 ATGAGGAGGACAAGGATGGCTACC-TGCACTGCATTGGATCTGGTGAATTTCA-GCCCTA 898 consensus_3345#1 ATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTA 276 *** **************** *** *************** ************ ****** consensus_3345#0 GCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTT 958 consensus_3345#1 GCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTT 336 ************************************************************ consensus_3345#0 CACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTC 1018 consensus_3345#1 CACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTC 396 ************************************************************ consensus_3345#0 ACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTT 1078 consensus_3345#1 ACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTT 456 ************************************************************ consensus_3345#0 TTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGA 1138 consensus_3345#1 TTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGA 516 ***** ****************************************************** consensus_3345#0 GAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGA 1198 consensus_3345#1 GAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGA 576 *************************************** ******************** consensus_3345#0 TGATGA--------- 1204 consensus_3345#1 TGATGATGATGATGA 591 ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||