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Oryza sativa
cluster # 3346 cluster # 3346       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3346#0 length = 688 sequences # 1  
consensus_3346#1 length = 591 sequences # 1  

consensusID : consensus_3346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT]

[+] EMBL CA767398             [AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT]


>consensus_3346#0 AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCT GTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCA TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG TGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAA GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAG TGCATGTTTATATCTTCATGGCTAACTT



consensusID : consensus_3346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA]

[+] EMBL AU172822             [CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA]


>consensus_3346#1 CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTT TCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTT TAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTA ACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTT GTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATC CCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATG CTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGA TTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGT GGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGG GTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3346#0      AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCT 60
consensus_3346#1      ------------------------------------------------------------
                                                                                  

consensus_3346#0      GTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCA 120
consensus_3346#1      ----------------------------------------CCAAATAGGACTAACTTTCA 20
                                                              ********************

consensus_3346#0      TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 180
consensus_3346#1      TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 80
                      ************************************************************

consensus_3346#0      TGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 240
consensus_3346#1      TGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 140
                      ***************  *******************************************

consensus_3346#0      ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 300
consensus_3346#1      ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 200
                      ************************************************************

consensus_3346#0      CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 360
consensus_3346#1      CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 260
                      ************************************************************

consensus_3346#0      CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 420
consensus_3346#1      CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 320
                      ************************************************************

consensus_3346#0      TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAA 480
consensus_3346#1      TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAA 380
                      ************************************ ***********************

consensus_3346#0      GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 540
consensus_3346#1      GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 440
                      ************************************************************

consensus_3346#0      CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 600
consensus_3346#1      CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 500
                      ************************************************************

consensus_3346#0      AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAG 660
consensus_3346#1      AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAG 560
                      ************************************ ***********************

consensus_3346#0      TGCATGTTTATATCTTCATGGCTAACTT--- 688
consensus_3346#1      TGCATGTTTATATCTTCAAAAAAAAAAAAAA 591
                      ******************     **      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)