These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT] [+] EMBL CA767398 [AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT] consensusID : consensus_3346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA] [+] EMBL AU172822 [CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3346#0 AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCT 60 consensus_3346#1 ------------------------------------------------------------ consensus_3346#0 GTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCA 120 consensus_3346#1 ----------------------------------------CCAAATAGGACTAACTTTCA 20 ******************** consensus_3346#0 TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 180 consensus_3346#1 TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 80 ************************************************************ consensus_3346#0 TGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 240 consensus_3346#1 TGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 140 *************** ******************************************* consensus_3346#0 ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 300 consensus_3346#1 ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 200 ************************************************************ consensus_3346#0 CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 360 consensus_3346#1 CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 260 ************************************************************ consensus_3346#0 CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 420 consensus_3346#1 CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 320 ************************************************************ consensus_3346#0 TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAA 480 consensus_3346#1 TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAA 380 ************************************ *********************** consensus_3346#0 GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 540 consensus_3346#1 GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 440 ************************************************************ consensus_3346#0 CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 600 consensus_3346#1 CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 500 ************************************************************ consensus_3346#0 AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAG 660 consensus_3346#1 AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAG 560 ************************************ *********************** consensus_3346#0 TGCATGTTTATATCTTCATGGCTAACTT--- 688 consensus_3346#1 TGCATGTTTATATCTTCAAAAAAAAAAAAAA 591 ****************** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||