These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1270 fasta sequence [TATTTTTAATAATATACGAAATCTTTCGATTCTAGACGAATTTAAAACATAGCAAAAAAAGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCGGTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACCAACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTAAGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAGAGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAGAGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTGAGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCAACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGTGCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCACCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTGACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCATCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTGCGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACCACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCTCTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCAACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGGACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAATAGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTTCTAGATCTAGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACTTAAAAAAAAACTTTATATTTTAGATTAAATTTTTATTTTAGTTTTTAATTTTTAGTTGTCTTAAAAAGATCCTAGTTTAATAAAACTTG] [+] EMBL AK110610 [TATTTTTAATAATATACGAAATCTTTCGATTCTAGACGAATTTAAAACATAGCAAAAAAAGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCGGTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACCAACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTAAGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAGAGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAGAGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTGAGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCAACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGTGCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCACCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTGACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCATCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTGCGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACCACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCTCTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCAACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGGACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAATAGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTTCTAGATCTAGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACTTAAAAAAAAACTTTATATTTTAGATTAAATTTTTATTTTAGTTTTTAATTTTTAGTTGTCTTAAAAAGATCCTAGTTTAATAAAACTTG] consensusID : consensus_3348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1245 fasta sequence [TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAAACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTGGTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACCAGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCAAGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGGACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCGAGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTGAGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCAACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGTGTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCACGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCGATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCACTCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGGCCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATCACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTTCGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCAACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGGACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTAAATAGAAATTTTCATTCTATAATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCAATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATTTTTTATTTTTACTTATTTAGATTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTTGTGTT] [+] EMBL AK108921 [TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAAACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTGGTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACCAGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCAAGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGGACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCGAGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTGAGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCAACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGTGTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCACGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCGATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCACTCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGGCCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATCACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTTCGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCAACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGGACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTAAATAGAAATTTTCATTCTATAATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCAATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATTTTTTATTTTTACTTATTTAGATTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTTGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3348#0 TATTTTTAATAATATACGAAAT----CTTTCGATTCTAGACGAATTTAAAACATAG---- 52 consensus_3348#1 ---TTTTAAAAAACAAAGAAGTGTGATTTTATATTTTAGCTAAGCTAAACACAAAAAGAA 57 ****** ** * *** * *** *** *** * * ** *** * consensus_3348#0 -CAAAAAA-------AGAAAATGTCGGAGACACTTCGAGTACTAGTTACTGGCTCAGCCG 104 consensus_3348#1 ACAAAAAACTATTTTAAAAAATGTCGGAGCCAATTCGAGTTCTAGTGACTGGTGCAGCTG 117 ******* * ************ ** ******* ***** ***** **** * consensus_3348#0 GTCAAATCGCCTACTCGCTGCTATACGCGATCGCGAACGGTGATGTGTTCGGAAAGAACC 164 consensus_3348#1 GTCAAATTGCCTACTCGCTTTTGTACGCGATCGCTAACGGTGACGTGTTCGGCAAGAACC 177 ******* *********** * *********** ******** ******** ******* consensus_3348#0 AACCGGTGATCTTGCACCTATTCGATATCTCGCCAATGTTGACGGCGATGGGAGGCGTTA 224 consensus_3348#1 AGCCGATCATTCTCCACATGTTCGACATCACGCCCATGCTCACCGCCATGGGTGGCGTCA 237 * *** * ** * *** * ***** *** **** *** * ** ** ***** ***** * consensus_3348#0 AGCTCGAGCTCGAGGACTGCTCGCTGCCGTTGCTCAAGGACGTCGTGGTCACCGACAAAG 284 consensus_3348#1 AGCTCGAGCTCGAGGACTGCTCGTTGCCGCTCCTCAAGGACGTCGTTGTCAGCGATCAGG 297 *********************** ***** * ************** **** *** * * consensus_3348#0 AGGAGGTCGCCTTCAAGGACATCGACGTCGCGATCATGGCTGGAGCCATGCCACGTAAAG 344 consensus_3348#1 ACTCGATCGCTTTCAAGGACATCGACGTGGCCATCATGACTGGTGCCATGCCGCGTCGCG 357 * * **** ***************** ** ****** **** ******** *** * consensus_3348#0 AGGGTATGGAGCGAAAGGACTTGCTCGCCGCCAACGTTCGCATCTTCAAGGCTCAAGGTG 404 consensus_3348#1 AGGGTATGGAGCGCAAGGACTTGCTCTCGGCTAACGTGCGCATCTTCAAGGCCCAGGGTG 417 ************* ************ * ** ***** ************** ** **** consensus_3348#0 AGGCGCTCGACAAGCACGCCAAGAAGACCGTCAAGGTCGTTGTGGTCGGAAACCCAGCCA 464 consensus_3348#1 AGGCGCTCGACAAGCATGCGAGAAAAACGGTGAAAGTACTTGTGGTAGGCAATCCGGCCA 477 **************** ** * ** ** ** ** ** ******* ** ** ** **** consensus_3348#0 ACACGAACTGTCTCATCCTCTCCAAGTACGCGCCCTCAATCCCACAAGAGAACTTCTCGT 524 consensus_3348#1 ACACAAACTGTCTCGTCCTCGCCAAGTACGCGCCATCCATACCGAGCGAGAACTTCTCGT 537 **** ********* ***** ************* ** ** ** ************* consensus_3348#0 GCTTGACGCGTCTCGATCACAACCGCGCCAAGACCCAAGTCGCGCTCAAGACCCATGTCA 584 consensus_3348#1 GTCTCACTCGTCTCGATCACAACCGCGCCAAGGCTCAGGTCGCTCTCAAGCTCGGTCTCA 597 * * ** ************************ * ** ***** ****** * * *** consensus_3348#0 CCTCGGATAAGGTTAAGAATGTGACCATCTGGGGCAACCACTCGTCGACCCAGTTCCCTG 644 consensus_3348#1 CGTCCGACAAAGTGAAGAACGTGATCATCTGGGGCAACCACTCGTCGACCCAGTTCCCCG 657 * ** ** ** ** ***** **** ********************************* * consensus_3348#0 ACTTGGCTCACGCTAAGGTCACTTTGCCAGATGGCTCAGTGAAGGGCGCCTATGAGGCCA 704 consensus_3348#1 ATTTGGCTCACGCTCAAGTCACGTTGAACGACGGCTCGAACAAAGGCGCCTACGAGGCAC 717 * ************ * ***** *** ** ***** ** ******** ***** consensus_3348#0 TCAATGACGAGAACTGGATCAAGAACGAGTTCATCCCATGCGTGCAGAAGCGAGGCGCTG 764 consensus_3348#1 TCAAGGACGAGAACTGGATCAAGAACGAGTTCATACCGTGCGTGCAGAAGCGAGGCGCGG 777 **** ***************************** ** ******************** * consensus_3348#0 CGATCATTGCGGCCCGAAAGCTCTCGTCAGCCATGTCGGCGGCGAAGGCCATCTGCGACC 824 consensus_3348#1 CCATTATTGCCGCTCGCAAGCTCTCGTCGGCCATGTCGGCTGCCAAGGCGATTTGCGATC 837 * ** ***** ** ** *********** *********** ** ***** ** ***** * consensus_3348#0 ACATGCGAGACTGGTGGCACGGAACTCAAGGAGACGAGTGGGTCTCAATGGGCATTGTCT 884 consensus_3348#1 ACATGCGTGACTGGTGGCACGGAACGAGCGGCGACGAGTGGGTCTCCATGGGCATCATTT 897 ******* ***************** ** ************** ******** * * consensus_3348#0 CTGACGGATCGTACGGAATCGAGAAGGGACTCGTCTACAGCTACCCTGTGCGCATTGCCA 944 consensus_3348#1 CGGACGGCTCGTACGGCATCGAGAAAGGTCTCGTGTACAGCTACCCGGTGCGAATCGTCA 957 * ***** ******** ******** ** ***** *********** ***** ** * ** consensus_3348#0 ACAAGAAGTGGACCATTGTGCAAGGACTCAGCGTCTCTGACTGGGCTCGTGATCTTATGG 1004 consensus_3348#1 ACAGGAAGTGGACGATCGTGCAAGGTCTCGCCATCAACGACTGGGCTCGATCGCTCATGG 1017 *** ********* ** ******** *** * ** *********** ** **** consensus_3348#0 ACAAGACCGCGAAAGAACTCATCGATGAGAGAAATGACGCTCTTGAGGCTACTAGCAAAT 1064 consensus_3348#1 ACAAGACTGCTCAAGAGCTCATCGAAGAGAGAAACGACGCTTTCGATGCTACTA---AAT 1074 ******* ** **** ******** ******** ****** * ** ******* *** consensus_3348#0 AGATTGAATATTGACTCAACCAATTGATGATCTCTTTTTTGAATGTTCATCCTTCCTTTT 1124 consensus_3348#1 AGA---AATTTTCATTCTAT-AATTTTTAATTGAACACTAAAAAAAAAGACGAGGCTTCA 1130 *** *** ** * ** * **** * ** * ** * *** consensus_3348#0 -CTAGATCT--AGTAGACTTTTTTATTACTATATTGTACTGCCAATTTTATTCGTAAACT 1181 consensus_3348#1 ATTAGATCTCAACTAAAAGCATATACAACAAGTTTTCATT-----TTTTATTTTTA--CT 1183 ******* * ** * * ** ** * ** * * ******* ** ** consensus_3348#0 TAAAAAAAAACTTTATATTTTAGATTAA-ATTTTTATTTTAGTTT--TTAATTTTTAGTT 1238 consensus_3348#1 TATTTAGA---TTTGTTTTTGAAAGCATCATTTACATTAGAAAATAATAGGTTTTCTTTT 1240 ** * * *** * *** * * * **** *** * * * **** ** consensus_3348#0 GTCTTAAAAAGATCCTAGTTTAATAAAACTTG 1270 consensus_3348#1 GTGTT--------------------------- 1245 ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||