cluster # 335

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Oryza sativa
cluster # 335 cluster # 335 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_335#0 length = 593 sequences # 1

consensus_335#1 length = 487 sequences # 1

consensusID : consensus_335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAAGCTGTCACCAAAACCAGCAAAGGTTCAACAGGACCAAAAGGTGAAAAAAAACAAAAACGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCAGATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTCGAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCATCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCCGTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGTTAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAAACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAGCTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATATATATC]

[+] EMBL CA755693             [ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAAGCTGTCACCAAAACCAGCAAAGGTTCAACAGGACCAAAAGGTGAAAAAAAACAAAAACGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCAGATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTCGAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCATCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCCGTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGTTAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAAACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAGCTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATATATATC]




>consensus_335#0
ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAAGCTGTCACC
AAAACCAGCAAAGGTTCAACAGGACCAAAAGGTGAAAAAAAACAAAAACGTCGACGAAAA
GAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCAGATACTGGTATT
TCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTCGAACGTATTGCC
GCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCATCACGTGAAATT
CAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCCGTATCAGAAGGT
ACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGTTAAATGGAGATG
ATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAAACCAACAGCCCT
CTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAGCTATTTGAATTT
GTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATATATATC

consensusID : consensus_335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [ACGTCAAATTCAATCAACATGCCACCAAAAACTCCATCGAAAGGTTCGAAAAAAGCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAACGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCTGATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTTGAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGCAGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCCGTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGTATTTTCTTTGAACTTGATTTAAAACGAACCCAAACAGCCCTCTTTAGGGCTACNAAAAAAAAAAAAAAAAAAAAACTCG]

[+] EMBL CA755611             [ACGTCAAATTCAATCAACATGCCACCAAAAACTCCATCGAAAGGTTCGAAAAAAGCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAACGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCTGATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTTGAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGCAGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCCGTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGTATTTTCTTTGAACTTGATTTAAAACGAACCCAAACAGCCCTCTTTAGGGCTACNAAAAAAAAAAAAAAAAAAAAACTCG]




>consensus_335#1
ACGTCAAATTCAATCAACATGCCACCAAAAACTCCATCGAAAGGTTCGAAAAAAGCCGTT
ACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAACGTCGC
CGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCTGATACA
GGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTTGAACGT
ATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGCAGTCGA
GAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCCGTATCT
GAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGTATTTTCTTTGAA
CTTGATTTAAAACGAACCCAAACAGCCCTCTTTAGGGCTACNAAAAAAAAAAAAAAAAAA
AAACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_335#0      ---------ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAA 51
consensus_335#1      ACGTCAAATTCAATCAACATGCCACCAAAAACTCCA------TCGAAAGGTTCGAAAAAA 54
                               ** ***  ***** ****** *** *      ** ******** ******

consensus_335#0      GCTGTCACCAAAACCAGCAAAGGTTCAACAGG-ACCAAAAGGT--GAAAAAAAACAAAAA 108
consensus_335#1      GCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAA 114
                     ** ** ** *****    *****  *  * **  **   *  *  ** *****    ***

consensus_335#0      CGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCA 168
consensus_335#1      CGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCT 174
                     ***** ****************************** * ******************** 

consensus_335#0      GATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTC 228
consensus_335#1      GATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTT 234
                     ***** ***************** ******** ***** ** ***** ** ******** 

consensus_335#0      GAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCA 288
consensus_335#1      GAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGC 294
                     *********** ****** *    ** ***** ** ***** ** ***** ******   

consensus_335#0      TCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCC 348
consensus_335#1      AGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCC 354
                        ** ************** ***** ****************** * ************

consensus_335#0      GTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGT 408
consensus_335#1      GTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGT------ 408
                     ***** ******************** ***************** * *   * *      

consensus_335#0      TAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAA 468
consensus_335#1      ---------------------ATTTTCTTTGA----ACTTGATTTAAAACGAACC----- 438
                                          * * ** ** *    * *  ** **  * * *       

consensus_335#0      ACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAG 528
consensus_335#1      -CAAACAGCCCTCTTTAGGGCTACNAAA---AAAAAAAAAAAAAAAAAACTCG------- 487
                      * ********************   *    * * *  ***** *   * ***       

consensus_335#0      CTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATAT 588
consensus_335#1      ------------------------------------------------------------
                                                                                 

consensus_335#0      ATATC 593
consensus_335#1      -----