These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTACTATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCTGGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGTTACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCTTTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAAGCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCTCTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAATCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTACAACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG] [+] EMBL AK068450 [GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTACTATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCTGGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGTTACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCTTTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAAGCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCTCTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAATCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTACAACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG] consensusID : consensus_3354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172859 [AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3354#0 GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTAC 60 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 TATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCT 120 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 GGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGT 180 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 TACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCT 240 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 TTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAA 300 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 GCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCT 360 consensus_3354#1 ------------------------------------------------------------ consensus_3354#0 CTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAA 420 consensus_3354#1 -------------------------AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAA 35 ********* ************* *********** consensus_3354#0 TCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGAC 480 consensus_3354#1 TCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGAC 95 ***************** ********** ************************ ****** consensus_3354#0 ATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACG 540 consensus_3354#1 ATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCG 155 ******************************************** ************ ** consensus_3354#0 GTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCAT 600 consensus_3354#1 GTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCAT 215 ***************************************** ****************** consensus_3354#0 TCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTAC 660 consensus_3354#1 TCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA--- 272 ******************************* ** * ** ** * consensus_3354#0 AACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG 705 consensus_3354#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||