These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1009 fasta sequence [GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCGGCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCTACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCCGCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCTACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCTACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCCTCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGCGGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACAACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGGTACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTGAACACATTCTTGGGGATAACCCGAGGAGATGAGCTACGTGGTGGGGCCGGAAGAATTACCGCGGGGGTGCCCACAGGGGGCGTGGCCCCCACCACGGGATAAATCCTTGGGCCCGGGGGGCACAAGGGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGTGGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCCCTGGGGGACCCGCTAGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCGACGG] [+] EMBL BE040704 [GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCGGCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCTACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCCGCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCTACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCTACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCCTCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGCGGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACAACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGGTACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTGAACACATTCTTGGGGATAACCCGAGGAGATGAGCTACGTGGTGGGGCCGGAAGAATTACCGCGGGGGTGCCCACAGGGGGCGTGGCCCCCACCACGGGATAAATCCTTGGGCCCGGGGGGCACAAGGGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGTGGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCCCTGGGGGACCCGCTAGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCGACGG] consensusID : consensus_3367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [ACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCGTGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGGGCCGACCCGAACGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGCGCCTCACCTACGCGCAG] [+] EMBL AU173081 [ACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCGTGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGGGCCGACCCGAACGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGCGCCTCACCTACGCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3367#0 GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCG 60 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 GCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCT 120 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 ACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCC 180 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 GCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCT 240 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 ACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCT 300 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 ACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCC 360 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 TCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGC 420 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 GGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACA 480 consensus_3367#1 ------------------------------------------------------------ consensus_3367#0 ACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCA 540 consensus_3367#1 ---------------------------------------------------ACTTCACCA 9 ********* consensus_3367#0 AGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCA 600 consensus_3367#1 AGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCA 69 ************************************************************ consensus_3367#0 ACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGG 660 consensus_3367#1 ACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACG-TCCCCGGCTGG 128 *** ****** ************************************* *********** consensus_3367#0 TACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTG 720 consensus_3367#1 TACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTG 188 ***** ** *************** ********** ********************* consensus_3367#0 AAC-ACATTCTTGGGGATAACCCGAGGA-GATGAGCTACGTGGTGGGG--CCGGAAGAAT 776 consensus_3367#1 AACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAG 248 *** ********************* ** ******************* * * ***** consensus_3367#0 TACC-GCGGGGG-TGC-CCACAGGGGG-CGTGGCCCCC--ACCACGGGAT-AAATCCTTG 829 consensus_3367#1 TACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCG 308 **** **** ** *** ********** *** * * ** ** **** ** ** * ** * consensus_3367#0 GGC-CCGGGGGGCACAAG--GGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGT 886 consensus_3367#1 TGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGG-GCC------------GACCCGAA 355 ** **** *** ***** * ********* ** * *** * ** * consensus_3367#0 GGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCC-CTGGGGGACCCGCT 945 consensus_3367#1 CGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGC- 414 * * ** * * **** ** *** * ** ** * **** *** consensus_3367#0 AGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCG 1005 consensus_3367#1 -GCCTCACCTACGCGCAG------------------------------------------ 431 * * * * ** ** consensus_3367#0 ACGG 1009 consensus_3367#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||