cluster # 3368

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Oryza sativa
cluster # 3368 cluster # 3368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3368#0 length = 860 sequences # 1

consensus_3368#1 length = 404 sequences # 1

consensusID : consensus_3368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 860
fasta sequence

                              [GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGAGATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGAGATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGGAGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCTTCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAAAGCTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAAGGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTCGGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTTCATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAATCAATGAAAGAGACAATGAACA]

[+] EMBL AK064726             [GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGAGATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGAGATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGGAGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCTTCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAAAGCTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAAGGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTCGGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTTCATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAATCAATGAAAGAGACAATGAACA]




>consensus_3368#0
GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGA
GATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGA
GATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGG
AGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCT
TCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAAAGC
TGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAAG
GAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCA
CGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGA
TGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTC
TGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTCG
GTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGC
TCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTT
CACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTTCA
TATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAATC
AATGAAAGAGACAATGAACA

consensusID : consensus_3368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTTTCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGTACAAGTTACAAAACTACCTGATGAGCTAAGCTGATTGCTGCAACATATTCATCCTGTGCA]

[+] EMBL CA767105             [CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTTTCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGTACAAGTTACAAAACTACCTGATGAGCTAAGCTGATTGCTGCAACATATTCATCCTGTGCA]




>consensus_3368#1
CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAG
TTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGGTTATTAATTAG
CTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTTTCAACAGTTTTGAGT
TATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAGATGATTCGAGGTCTC
AAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAA
GTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGTACAAGTTACAAAACTA
CCTGATGAGCTAAGCTGATTGCTGCAACATATTCATCCTGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3368#0      GCACACCATCCAGGCTTCGCTTCCTCCAATCCACGACAATGGCGCCCGCGTCGCTGACGA 60
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      GATTGACCAACCCGTTGCCGTGCGCCTCTCCATCTCCAAGATGCCGGCGCCGGCCGGGGA 120
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      GATCTCCGCCGGCGAGGGCGGCGGCGTGCGGGGTGGTTTCCAGGAGGAGGGCGGTGTCGG 180
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      AGATGGCGATTCTTGGCGGCGCCGCCGCGGCCGCGGCCTCCTGCTGCGTCGATCTCTTCT 240
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      TCGCCCACATGCCTGCCCGTGCCGCCACGCTGGAGCCTGATGTGATCAGGTACAGAA-AG 299
consensus_3368#1      ----CAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATT----TCGTGCATAGCACGG 52
                          * *     **    ******** ***    *  *  *    **  * * ** *  *

consensus_3368#0      CTGGACAGTGGAGTGAAGCTTGAAGATGTTGTGGATGGCGAGGGTCCAGAAGCACGTGAA 359
consensus_3368#1      TTGACCAGTTTAGCG--GCGAGAGTAAGCCG-----GTCACACTTGCACTTGATGGAAAA 105
                       **  ****  ** *  **  **  * *  *     * *     * **   *   *  **

consensus_3368#0      GGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGC 419
consensus_3368#1      GAGGTTATTAATTAGCTCCGCTCCTGAAAATTTCGCATCATTCAGATATCCTCACATTTT 165
                      *  * * *     *  **  **           ***   * *      * *   ***   

consensus_3368#0      ACGGTTGACCAGTTTAGCGGCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAG 479
consensus_3368#1      TCAACAGTTTTGAGTTATTCTGATATCTGGTTTAATAGTCTTGTTTTAAGTCATTTACAG 225
                       *    *    *  *      ** *    *      *  ****   *   *     * **

consensus_3368#0      ATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCT 539
consensus_3368#1      ATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAGACAGGAGGTAAGAGGAGAGCT 285
                      ************************************************************

consensus_3368#0      CTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTTC 599
consensus_3368#1      CTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGGT- 344
                      ********************************************************* * 

consensus_3368#0      GGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGC-T 658
consensus_3368#1      -ACAAGTTACAAAACTACCTG--ATGAGCTAAGCTGATT--GCTGCAACATATTCATCCT 399
                               * ** *  ****  *   ** ***  *  *  * **    *  **** * *

consensus_3368#0      GCTCAAGGTCCTCTGACCCTGAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTG 718
consensus_3368#1      GTGCA------------------------------------------------------- 404
                      *  **                                                       

consensus_3368#0      TTCACTCTTCAAAGAATATGCATTTCTCTTTCAGAATAAACTCAGAAAACTGTACTGTTT 778
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      CATATGTATAAGATACAGTGATCACTTGCTGATTTGAAACGCAACTAGCAGCAAGTTGAA 838
consensus_3368#1      ------------------------------------------------------------
                                                                                  

consensus_3368#0      TCAATGAAAGAGACAATGAACA 860
consensus_3368#1      ----------------------