These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTTTGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCCCAGAAAAAAAAATGTGTGTACAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGCGATTTTTTTTTAGTTGTTGACCAAACTAACACTAGAAGCGTCCTGTCTGGTAGGGAGACGATAGTTTATCAAAGTGTTCAACTGTCAAGGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGGATCCAATCGTGTCTCACCAGAACTCATGGCGTGTGAATAAAGAAAAAAAAAA] [+] EMBL BI803834 [AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTTTGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCCCAGAAAAAAAAATGTGTGTACAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGCGATTTTTTTTTAGTTGTTGACCAAACTAACACTAGAAGCGTCCTGTCTGGTAGGGAGACGATAGTTTATCAAAGTGTTCAACTGTCAAGGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGGATCCAATCGTGTCTCACCAGAACTCATGGCGTGTGAATAAAGAAAAAAAAAA] consensusID : consensus_3371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [ATGGAGACTTTTGAAGATCTTTCAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGCCCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGTCAACTGTCAAGGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCACTCATTTACCATTTTCTTCTTTGATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA] [+] EMBL BI803360 [ATGGAGACTTTTGAAGATCTTTCAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGCCCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGTCAACTGTCAAGGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCACTCATTTACCATTTTCTTCTTTGATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3371#0 AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTT 60 consensus_3371#1 -------------------------------------------------ATGGAGACTTT 11 ** **** consensus_3371#0 TGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATAT 120 consensus_3371#1 TGAA--GATCTTTC----AATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATAT 65 **** *** * ****************************************** consensus_3371#0 TTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATG 180 consensus_3371#1 TTCTCGAGTCCATGAAAAATT-GCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATG 124 ********************* ************************************** consensus_3371#0 GAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTAT 240 consensus_3371#1 GAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTAT 184 ************************************************************ consensus_3371#0 TTAGC-CCAGAAAAAAAAATGTGTGTACAAA-GAGAGAAAGTACAACCTCATGGGCTAGC 298 consensus_3371#1 TTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGC 244 ***** ************************* **************************** consensus_3371#0 GTCAAGGACATCTGGGAATTGAGATG-CGATTTTTTTTTAGTTGTTGACCAAACT--AAC 355 consensus_3371#1 GTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGC 304 ************************** *************************** * * consensus_3371#0 ACTAGAAGCGTCCTG-TCTGGTAGGGAG-ACGATAGTTTATCAAAGTGTTCAACTGTCAA 413 consensus_3371#1 CCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGT-CAACTGTCAA 363 ************** ************ ******* ************ ********** consensus_3371#0 GGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGG 473 consensus_3371#1 GGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCAC-TCATTTACCATTTTCTTCTTTG 422 **** *** ** ******** **************** *** * *** * * * * * consensus_3371#0 ATC-CAATCGTGTCTCACCAGAA-CTCATGGCGTGTGAATAAAGAAAAAAAAAA---- 525 consensus_3371#1 ATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA 480 ** ******************* ****************** *** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||