cluster # 3377

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Oryza sativa
cluster # 3377 cluster # 3377 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3377#0 length = 514 sequences # 1

consensus_3377#1 length = 499 sequences # 1

consensusID : consensus_3377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGTGATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGTCGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGATTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCTTGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCGTGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGATAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTATTGTTACGGTATTCCAGGCATATAAACACTCATG]

[+] EMBL AK099523             [TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGTGATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGTCGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGATTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCTTGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCGTGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGATAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTATTGTTACGGTATTCCAGGCATATAAACACTCATG]




>consensus_3377#0
TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGT
GATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGT
CGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGA
TTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCT
TGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCG
TGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGA
TAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGT
TGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTA
TTGTTACGGTATTCCAGGCATATAAACACTCATG

consensusID : consensus_3377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCTTGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCGTGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGATAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGATTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATTTGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCCTGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTGTTTTTTTCCCCACTGTTAGTTACTCATTTCCTT]

[-] EMBL BI306119             [GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCTTGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCGTGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGATAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGATTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATTTGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCCTGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTGTTTTTTTCCCCACTGTTAGTTACTCATTTCCTT]




>consensus_3377#1
GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCTTGGCAAAGGTGGGG
CTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCGTGGCTGCAAATCCC
GTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGATAAAATTTTCCCCC
CCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTTTATGGACAT
CGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGATTGTTACGGGATTC
CAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATTTGTTTGGATTGCCA
CCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCCTGCCAAACGCAAAA
GGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTGTTTTTTTCCCCACT
GTTAGTTACTCATTTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3377#0      TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGT 60
consensus_3377#1      ------------------------------------------------------------
                                                                                  

consensus_3377#0      GATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGT 120
consensus_3377#1      ------------------------------------------------------------
                                                                                  

consensus_3377#0      CGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGA 180
consensus_3377#1      ------------------------------------------------------------
                                                                                  

consensus_3377#0      TTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCT 240
consensus_3377#1      --------------GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCT 46
                                     ***** *************** ****** **** **** ******

consensus_3377#0      TGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCG 300
consensus_3377#1      TGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCG 106
                      ***** ***** ******************  ***** ***** ******** *******

consensus_3377#0      TGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGA 360
consensus_3377#1      TGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGA 166
                      ********************** ************** **** ********** ******

consensus_3377#0      TAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGT 420
consensus_3377#1      TAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGT 226
                      *** ** *** * ************* *********************************

consensus_3377#0      TGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTA 480
consensus_3377#1      TGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGA 286
                      **** **** ***********  ********* ********** * ** ********* *

consensus_3377#0      TTGTTACGGTATTCCAGGCATATAAACACTCATG-------------------------- 514
consensus_3377#1      TTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATT 346
                      ********* ********** ****** ******                          

consensus_3377#0      ------------------------------------------------------------
consensus_3377#1      TGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCC 406
                                                                                  

consensus_3377#0      ------------------------------------------------------------
consensus_3377#1      TGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTG 466
                                                                                  

consensus_3377#0      ---------------------------------
consensus_3377#1      TTTTTTTCCCCACTGTTAGTTACTCATTTCCTT 499