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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1498 fasta sequence
[CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG]
[+] EMBL AK107386 [CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG]
consensusID : consensus_3381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG]
[+] EMBL CA767248 [GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3381#0 CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTC 60
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 GCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACA 120
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 TCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACC 180
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 CTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGAC 240
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 GCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGG 300
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 ACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACA 360
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 TCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACG 420
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 AGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCA 480
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 ACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCT 540
consensus_3381#1 ----------------------------------------------------GGCCTTCT 8
********
consensus_3381#0 GGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTG 600
consensus_3381#1 GGGGCGAGTACGC-GCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTC 67
************* ********* * ***************** ** ** ******* *
consensus_3381#0 TGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCA 660
consensus_3381#1 TGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAG 127
**************** ******** * ********* *******************
consensus_3381#0 TAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGA 720
consensus_3381#1 TAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGA 187
**************** ****************** **** *** *** *********
consensus_3381#0 GCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTA 780
consensus_3381#1 ATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCA 247
******** ** *** ************** ******************** ** *
consensus_3381#0 AAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTA 840
consensus_3381#1 AGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCA 307
* ********** * * ** *** ** *** * * *** *** ******* ** *
consensus_3381#0 TTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAG 900
consensus_3381#1 TTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAG 367
********************** ***************************** ** ****
consensus_3381#0 GTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCT 960
consensus_3381#1 GATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCT 427
* ** **** ******************* ************ ******** *******
consensus_3381#0 TCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 1020
consensus_3381#1 TCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 487
********* ***************** ********************************
consensus_3381#0 TTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCT---TG 1077
consensus_3381#1 TTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTG 547
************************* ************** ********** * **
consensus_3381#0 CTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTG 1137
consensus_3381#1 CTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTG 607
********* ****** ************** ***************************
consensus_3381#0 ACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACC-TTGATGGTGTCTATGAG 1196
consensus_3381#1 ACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGAN 667
************* ** ** ***** ********* ***** ******* ** *****
consensus_3381#0 GGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCAC 1256
consensus_3381#1 GACG-------------AGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACAT 714
* ** **** ****** ******************** ****** **
consensus_3381#0 GTTCCTGAAATGA--ATGCCATGCGTATGGTGGTACTTCTG-CATGGTTCACTGGATCTG 1313
consensus_3381#1 GGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAA 774
* * *** ***** *** * ** ***** *** **** ** * ** * *** **
consensus_3381#0 CTGCTCT--CTGGGGTGTCACC--ACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGT 1369
consensus_3381#1 TCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG------- 827
* * ** * * **** * *** **** * *******
consensus_3381#0 TCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATG 1429
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 GCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGAT 1489
consensus_3381#1 ------------------------------------------------------------
consensus_3381#0 TATCATTTG 1498
consensus_3381#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||