These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1798 fasta sequence [CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGACTTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTTCTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCTCTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTCGAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTGTCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACGGAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGACTTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAGAGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATCCTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCCTACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTACGACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGCATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGCGCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAGAAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTGGCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCGCGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCCACCATCTTTCTAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGCTCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCGCGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGCACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATATGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAATTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT] [+] EMBL AK064289 [CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGACTTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTTCTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCTCTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTCGAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTGTCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACGGAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGACTTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAGAGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATCCTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCCTACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTACGACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGCATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGCGCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAGAAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTGGCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCGCGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCCACCATCTTTCTAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGCTCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCGCGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGCACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATATGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAATTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT] consensusID : consensus_3386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GCAGCAATACTATTTCTGGCATTTCTTGAACTGCTCTTACAAATATCATCACCATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCTCATCTACCACCGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT] [-] EMBL CA767286 [GCAGCAATACTATTTCTGGCATTTCTTGAACTGCTCTTACAAATATCATCACCATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCTCATCTACCACCGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3386#0 CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGAC 60 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTT 120 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 CTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCT 180 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 CTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTC 240 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 GAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTG 300 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACG 360 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 GAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGAC 420 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAG 480 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 AGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATC 540 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 CTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCC 600 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTAC 660 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 GACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGC 720 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 ATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGC 780 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 GCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAG 840 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 AAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTG 900 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 GCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCG 960 consensus_3386#1 ------------------------------------------------------GCAGCA 6 *** consensus_3386#0 CGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCC 1020 consensus_3386#1 ATACTATTTCTGGCATTTCT--------TGAACTGCTCT-----TACAAATATCATCACC 53 ** * * *** * ** ** ** ** ** *** * * ** consensus_3386#0 ACCATCTTTCT--AGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAG 1078 consensus_3386#1 ATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAG 113 * **** * *********************************************** consensus_3386#0 TGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCA 1138 consensus_3386#1 TGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCA 173 ************************************************************ consensus_3386#0 TCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGC 1198 consensus_3386#1 TCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGC 233 ***************************** ****************************** consensus_3386#0 TCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCC 1258 consensus_3386#1 TCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCC 293 ** ********************************************************* consensus_3386#0 GATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCG 1318 consensus_3386#1 GATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGC--TCATCTACCAC- 350 ********************************************** * ** ** * consensus_3386#0 CGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGC 1378 consensus_3386#1 CGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATG--TCCTCCTCTTCCTGCTCCTCC 408 ** **** ** * * ** ** * ** * *** * *** * consensus_3386#0 CGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCAT 1438 consensus_3386#1 T----------------------------------------------------------- 409 consensus_3386#0 TTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGC 1498 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 ACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATA 1558 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTA 1618 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 ACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCA 1678 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 AAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAA 1738 consensus_3386#1 ------------------------------------------------------------ consensus_3386#0 TTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT 1798 consensus_3386#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||