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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3394 cluster # 3394       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3394#0 length = 797 sequences # 1  
consensus_3394#1 length = 747 sequences # 1  

consensusID : consensus_3394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence
                              [TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA]

[+] EMBL CA767374             [TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA]


>consensus_3394#0 TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTA GCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCA ACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGT TCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATG AGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAG AATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTT TGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGC TGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTAT GGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATT TGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTG GAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGG AAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTAT AANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGAT TACCCTGGNTCTCACAA



consensusID : consensus_3394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT]

[+] EMBL CB096545             [CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT]


>consensus_3394#1 CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCC TGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAAC AGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTAT TTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGA CTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGG CTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTC AAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCT TTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCT GANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCN CNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGN AANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAA NCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGN ATCCTANNATAATACTAGCAAGATGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3394#0      TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTA 60
consensus_3394#1      ----CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTA 56
                          ***  ******************* ************************ ******

consensus_3394#0      GCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCA 120
consensus_3394#1      GCCCTGCAAATTGCTTTGGAGT-ATCGNCGNCGGATGATGACGATGTGTTTATTATGGCA 115
                      *** ****************** **** ** *****************************

consensus_3394#0      ACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGT 180
consensus_3394#1      ACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGT 175
                      ******* ******************************** *******************

consensus_3394#0      TCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATG 240
consensus_3394#1      TCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATG 235
                      **************** ** ******************* ********************

consensus_3394#0      AGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAG 300
consensus_3394#1      ANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAG 295
                      * ******* ********************************************* ****

consensus_3394#0      AATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTT 360
consensus_3394#1      AATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTT 355
                      *********************** ************************************

consensus_3394#0      TGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATC-CATTGCAAAAGATTACTG 419
consensus_3394#1      TGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTG 415
                      ** *********************** *************  ******************

consensus_3394#0      CTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTA 479
consensus_3394#1      CTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTA 475
                      ********* ***************** *********** ********************

consensus_3394#0      TGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGT-TTGTGAGAGCTACTGTTGAAATA 538
consensus_3394#1      TGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATA 535
                      ******* ************ **************    ********** ** *******

consensus_3394#0      TTTGG-GGATGAATATTTAAGGTCTCCCAATTCAAGGTGATAC-TAATAGATTGCTTGCA 596
consensus_3394#1      TTTCNCNNATGAATCTNNAAGGTCTCCCNAT-CAANATGATACCTAATAGATTGCTTGCN 594
                      ***     ****** *  ********** ** ***  ****** *************** 

consensus_3394#0      ATT--GGAGAACAAAAAGGCTTTCCAGGTA-TGCTTGGG--AACATAG-ATTGCATGCAC 650
consensus_3394#1      ATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCAC 654
                      **     * *****  ** ******* **  ***** **  *** *** ***********

consensus_3394#0      TGGGAAG-TGGAAAAACTGT-CCAACAGCTTGGTCTGGCATGTACCAAGGGCCAT--GNT 706
consensus_3394#1      TGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNT 714
                      ** ***  **  ***** ** ** *****  * ** ******* ** * ****    ***

consensus_3394#0      CAT--GAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGG 764
consensus_3394#1      CNTTGNATCCTANNATAATACTAGCAAGATGTT--------------------------- 747
                      * *   * ****  **** ****  *** ** *                           

consensus_3394#0      CATGCTTTTTTTGGATTACCCTGGNTCTCACAA 797
consensus_3394#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)