These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA] [+] EMBL CA767374 [TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA] consensusID : consensus_3394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT] [+] EMBL CB096545 [CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3394#0 TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTA 60 consensus_3394#1 ----CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTA 56 *** ******************* ************************ ****** consensus_3394#0 GCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCA 120 consensus_3394#1 GCCCTGCAAATTGCTTTGGAGT-ATCGNCGNCGGATGATGACGATGTGTTTATTATGGCA 115 *** ****************** **** ** ***************************** consensus_3394#0 ACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGT 180 consensus_3394#1 ACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGT 175 ******* ******************************** ******************* consensus_3394#0 TCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATG 240 consensus_3394#1 TCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATG 235 **************** ** ******************* ******************** consensus_3394#0 AGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAG 300 consensus_3394#1 ANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAG 295 * ******* ********************************************* **** consensus_3394#0 AATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTT 360 consensus_3394#1 AATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTT 355 *********************** ************************************ consensus_3394#0 TGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATC-CATTGCAAAAGATTACTG 419 consensus_3394#1 TGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTG 415 ** *********************** ************* ****************** consensus_3394#0 CTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTA 479 consensus_3394#1 CTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTA 475 ********* ***************** *********** ******************** consensus_3394#0 TGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGT-TTGTGAGAGCTACTGTTGAAATA 538 consensus_3394#1 TGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATA 535 ******* ************ ************** ********** ** ******* consensus_3394#0 TTTGG-GGATGAATATTTAAGGTCTCCCAATTCAAGGTGATAC-TAATAGATTGCTTGCA 596 consensus_3394#1 TTTCNCNNATGAATCTNNAAGGTCTCCCNAT-CAANATGATACCTAATAGATTGCTTGCN 594 *** ****** * ********** ** *** ****** *************** consensus_3394#0 ATT--GGAGAACAAAAAGGCTTTCCAGGTA-TGCTTGGG--AACATAG-ATTGCATGCAC 650 consensus_3394#1 ATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCAC 654 ** * ***** ** ******* ** ***** ** *** *** *********** consensus_3394#0 TGGGAAG-TGGAAAAACTGT-CCAACAGCTTGGTCTGGCATGTACCAAGGGCCAT--GNT 706 consensus_3394#1 TGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNT 714 ** *** ** ***** ** ** ***** * ** ******* ** * **** *** consensus_3394#0 CAT--GAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGG 764 consensus_3394#1 CNTTGNATCCTANNATAATACTAGCAAGATGTT--------------------------- 747 * * * **** **** **** *** ** * consensus_3394#0 CATGCTTTTTTTGGATTACCCTGGNTCTCACAA 797 consensus_3394#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||