These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1896 fasta sequence [CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCGCCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGGGCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAGGGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGTCGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGCACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGCTCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGACCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCGGAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTATTCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGGACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCTAGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTTGGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAAGGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACGTGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTTGCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAGAAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATTCAAAAAAGCAAGGCAGGAGGGGACTCCTTGAGATTCTAGAACAAAAGAACATCCGCTTTGTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAAGAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGGATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCCAATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGAAAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACTTCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACAATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA] [+] EMBL AK110791 [CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCGCCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGGGCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAGGGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGTCGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGCACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGCTCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGACCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCGGAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTATTCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGGACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCTAGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTTGGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAAGGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACGTGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTTGCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAGAAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATTCAAAAAAGCAAGGCAGGAGGGGACTCCTTGAGATTCTAGAACAAAAGAACATCCGCTTTGTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAAGAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGGATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCCAATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGAAAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACTTCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACAATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA] consensusID : consensus_3398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [GAATGTTCCATCCACCTTCTCTCTTAGGTTATCTTGCTTGTGATTGTGATAGAGCAAAGCAATCTGATTGCAGGAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAGAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATTCAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAAAACATCCGCTTTTGNTCCTTTTGATGGCTGGNAAAGATGATTCTAAGAAAAATGCAGGTGAGCTGAAAACAANCTANAGAGANATACCANCTGGAATGAAATCTGATGGCTTCAAACTAAGGATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC] [+] EMBL CA767433 [GAATGTTCCATCCACCTTCTCTCTTAGGTTATCTTGCTTGTGATTGTGATAGAGCAAAGCAATCTGATTGCAGGAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACTATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTTTGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGCCGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGTTGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAAATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAAGGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGTGGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAGAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATTCAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAAAACATCCGCTTTTGNTCCTTTTGATGGCTGGNAAAGATGATTCTAAGAAAAATGCAGGTGAGCTGAAAACAANCTANAGAGANATACCANCTGGAATGAAATCTGATGGCTTCAAACTAAGGATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3398#0 CGGCCGTTCACCGCCGCCTCCATCTCCCTCCTCGAAGCGCCTCCGCCGCCGCCGCCGCCG 60 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 CCGAGGAGAGGTGTGTGTCGGCGAGCCCCTCACCTGACTCCAACCGCCGCCTTCGATGGG 120 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 GCGCGTGAGGCCTCTCCACCACGCGGCGAGGAGGCTGCTGCTGCTGTTCCCGCGGCCGAG 180 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 GGCCTTCTCCTCCGCCGCCGCTGCCGCGCCCTCGCGCGAGCCGCTCCACGTCTGCGTCGT 240 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 CGGCAGCGGGCCCGCCGGGTTCTACACGGCCGACAAGATGCTTAAGGGCCATGAAGGAGC 300 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 ACAGGTCGATATTATTGATAGGCTGCCGACACCTTTTGGGTTAGTTCGATCTGGAGTGGC 360 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 TCCAGATCATCCAGAAACAAAGATTGTGGTAAATCAATTTTCTCGTGTAGCTGCAAATGA 420 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 CCGCTGTCAATTCTATGGGAATGTAACACTAGGAAGGGATGTATCTCTATCAGAGCTTCG 480 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 GAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGGTCACTTGGTAT 540 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 TCCTGGGGAGGATCTGAGGGGAATACATTCGGCTCGAGAGTTTGTGTGGTGGTATAATGG 600 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 ACATCCAGACATGTGCAACTTGGCACCTGACTTGCAAAGCACAGATTCTGCTGTTGTTCT 660 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 AGGCCAGGGAAATGTTGCTCTTGATGTTGCCCGTATTCTTCTTCGTTGTACATCTGAGTT 720 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 GGCTGCTACAGATATTGCTGATTATGCTTTGGATGCTCTCCGTGGCAGCACAATAAAGAA 780 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 GGTATACTTGGTTGGGAGAAGGGGCCCAGTACAGGCAGCATGCACAGCTAAAGAACTACG 840 consensus_3398#1 --------------------------------------------------GAATGTTCCA 10 * * * consensus_3398#0 TGAAATTTTAGGTTTGAAAAACGTCCATGTCTTCATCAAGGAGGCTGATCTTGTGACCTT 900 consensus_3398#1 TCCACCTTCTCTCTTAGGTTATCT-----TGCTTGTGATTGTGATAGAGCAAAGCAATCT 65 * * ** ** * * * * * * * * ** * * * consensus_3398#0 GCCTGCAGATGAGGAGGAGATTAGGAATAGTAGAATTAAAAGAAGGGTGTACGAGCTACT 960 consensus_3398#1 GATTGCAG-----GAGGAGATTAGGAATAGCAGAATTAAAAGAAGGGTGTACGAGCTACT 120 * ***** ***************** ***************************** consensus_3398#0 ATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTT 1020 consensus_3398#1 ATCTAAAGCTGCAATTGCGCATAAAGGAAAGAATAATAATGGCCAAAAGGAGCTTCACTT 180 ************************************************************ consensus_3398#0 TGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGC 1080 consensus_3398#1 TGTGTTTTTTAGGAGACCTACCAGATTTCTCCCATCAGAAGATGGTGTGACAGTTGGTGC 240 ************************************************************ consensus_3398#0 CGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGT 1140 consensus_3398#1 CGTGCAACTTGAAAAGACTTGTTTAAAAGATGATGGTGTGGCTGGAAAGCAGGTCGCAGT 300 ************************************************************ consensus_3398#0 TGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAA 1200 consensus_3398#1 TGGAACTGGTGAGTTTGAAGATCTAAAATGTGGGTTGGTCTTGAAAAGTATTGGATACAA 360 ************************************************************ consensus_3398#0 ATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAA 1260 consensus_3398#1 ATCCTTGCCAGTGGAAGGTTTGCCCTTTGACAAATACAGAGGAATTGTCCCAAATTTGAA 420 ************************************************************ consensus_3398#0 GGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGT 1320 consensus_3398#1 GGGCAGGGTTTTGAGTAGTGAATCTGAGAATGCCACAGTGGAACCAGGGCTGTATGTGGT 480 ************************************************************ consensus_3398#0 GG-GATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTCCATTGTGCCGAAG 1379 consensus_3398#1 GGCGATGGTTAAAGAGAGGGCCAACTGGCATAGTTGCCACAAATCTNCATTGTGCCGAAG 540 ** ******************************************* ************* consensus_3398#0 AAACAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGTTCATGGGACCTTCTGATT 1439 consensus_3398#1 AA-CAGTGGCGAGCATCCTTGAAGATGACAAGAAGGGGTTGGTCATGGGACCNTCTGATT 599 ** ************************************** ********** ******* consensus_3398#0 CAAAAAAGCAAGGCAGGAGGGGACTCC-TTGAGATTCTAGAACAAAAGAACATCCGCTTT 1498 consensus_3398#1 CAAAAAAGCAAGGCAGGANGGGACTCCCTTGAGATTCTANAACAAAA-AACATCCGCTTT 658 ****************** ******** *********** ******* ************ consensus_3398#0 -GTTCCTTTTGATGGCTGGGAAAAGATTGATTCTAAGGAAAAGATGGCAGGTGAGCTGAA 1557 consensus_3398#1 TGNTCCTTTTGATGGCTGGNAAAGA--TGATTCTAAGAAAAAT---GCAGGTGAGCTGAA 713 * **************** *** ********** **** ************** consensus_3398#0 GAACAAACCTAGAGAGAAGATAACAACCTGGAATGAAATCCTGATGGCTTCAAACTAGGG 1617 consensus_3398#1 AA--CAANCTANAGAGANA--TACCANCTGGAATGAAATC-TGATGGCTTCAAACTAAGG 768 * ** *** ***** ** * ************* **************** ** consensus_3398#0 ATGAAAGTGAGGGCAGTCAATTTTGTTCTCTAGCATGTCTTGTAGAATTACATTAAAGCC 1677 consensus_3398#1 ATGNAAGNGAGGGCAGCCAATTTTGNTNTNTAACATGGCTTGGGAAATACCNTTAAAGC- 827 *** *** ******** ******** * * ** **** **** *** * ******* consensus_3398#0 AATTCTGCTCTTATAGATACCAGGAATAAAGTTTCAACTGACTTTGGCATAGTACACGGA 1737 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 AAAGCTAGAATGGAAAGCTGTAACAAGTGAAGTATTGCAACAATGTGCAAAAGTGGTACT 1797 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 TCTTATCATACAAATGGTTTCTCACTGTCCTGTGGTATCCATTTTTGAAACCTGGAGACA 1857 consensus_3398#1 ------------------------------------------------------------ consensus_3398#0 ATTCGTTGCCAACTTTGGAGAAAATATTATTCCTGACAA 1896 consensus_3398#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||