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Oryza sativa
cluster # 3400 cluster # 3400       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3400#0 length = 1356 sequences # 2  

consensusID : consensus_3400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1356
fasta sequence
                              [AAATCCCAGGCATGTTCCCCACAGCCGGCGGCCGCCGGCTCCTCGTCCTCATCCGCCGCGCCTCCGCCGCCGCCGCGGCCGGCGCAAACCCTAACCACCACCACCACCACGCCACGCTTTTCACCCATCGCTACTCTTCGTCCCCCCTAGCAAGAACCCCTGAGGCGGAATCCGCCGCCGCGGCCTCCTACCTCGTCGCCTCCGTCGGCCTCTCCCCGGCCGCCGCCGCCAGGATCTCCCGCAAGGCACGCTTCCGTTCCAACGCCGACGCCGAAGCCGTCGTCTCCCTCCTCCGCGGCCACGGCTTCTCCGACGCCAACATCGCGCAGGTGCTCCCAAAAATCCCGGGCCTCCTCATCCTCAACCCGGACAAGATCCTCCGGCCAAAGCTCGAGTACTTCGCCTCCCTCGGGGTGGTCCCCTCGGCACTGTCCCGCGCACCCCTCCTCGCGCGCAGCCAGGAGAAGCACCTCGTCCCGTGCGTCGAGTTCATCCGCGGCGTCGTTGGCACCGACGCCAACCTCTGCGCGGCCATCTCCCGGAACCCCTGGGCACTCTGGTGCGACATTAACAGCAGCATGCGCCCCGCCGTGGAATCCCTTCGCCGCCACGGCCTCGCTGAGGCGAACATCTCCAGGCTCGTCGTCATCAATCTCAGCGCTCTCACGATGTCACCCGACCGCATTGACGGGATCTTTGGGGACCTGGAGGCGCTCGAGCTGCCCATCTCGCATTCGCGCTTCGTGTACGGCTTCTGGGCACTGTCCAGACTCAAGAGGGGGGCATGGGAGGAACGGATGTCCGTGTTCATGAGATTTGGGGTTTCCAGGAGCGAGTTGCTCAAGGCATTCAGGGAGCAGCCCGGTATACTAGTGTTCACAGCTAAAACTATCCAGCGGAAGCTCAGTTTCTACCAGGAAAAGCTGAAGGTTGCACCGGCAGATGTGATTGCACATCCTCTTCTCTTGACGTTCAGCTTGGAGAAGAACATCATACCTAAATGTGCCGTGCTGAATGTGCTATTGAGGGAGGGGAAGATTAAGAGATATGGGAGAGAGATGGACTTGTTGAGACCCTTGCAGCGTAGCAATATAAGTTTCTTTGAGAGATTTGTGAGGAAGTATGAGGAAGATGTGCCAGATGTTGTAAAAGCGTACGAGGGGAAGATTAAGTTCACGGGATTCATGGATTAGGATGTCAATGTTTGATTATGCTGAGGCCAAGGCGCCAGCTTTCTAGGGTGTATTCTCTGTAGCCTGTAGGTAAGGCTAAAATTGTCGTCAAATTAATGCATATTGCTTCCTCCTTTTTTTTGAACTAACTAACATCATATAAATGAAAATGGAGGTAGTACAT]

[+] EMBL AK064244             [AAATCCCAGGCATGTTCCCCACAGCCGGCGGCCGCCGGCTCCTCGTCCTCATCCGCCGCGCCTCCGCCGCCGCCGCGGCCGGCGCAAACCCTAACCACCACCACCACCACGCCACGCTTTTCACCCATCGCTACTCTTCGTCCCCCCTAGCAAGAACCCCTGAGGCGGAATCCGCCGCCGCGGCCTCCTACCTCGTCGCCTCCGTCGGCCTCTCCCCGGCCGCCGCCGCCAGGATCTCCCGCAAGGCACGCTTCCGTTCCAACGCCGACGCCGAAGCCGTCGTCTCCCTCCTCCGCGGCCACGGCTTCTCCGACGCCAACATCGCGCAGGTGCTCCCAAAAATCCCGGGCCTCCTCATCCTCAACCCGGACAAGATCCTCCGGCCAAAGCTCGAGTACTTCGCCTCCCTCGGGGTGGTCCCCTCGGCACTGTCCCGCGCACCCCTCCTCGCGCGCAGCCAGGAGAAGCACCTCGTCCCGTGCGTCGAGTTCATCCGCGGCGTCGTTGGCACCGACGCCAACCTCTGCGCGGCCATCTCCCGGAACCCCTGGGCACTCTGGTGCGACATTAACAGCAGCATGCGCCCCGCCGTGGAATCCCTTCGCCGCCACGGCCTCGCTGAGGCGAACATCTCCAGGCTCGTCGTCATCAATCTCAGCGCTCTCACGATGTCACCCGACCGCATTGACGGGATCTTTGGGGACCTGGAGGCGCTCGAGCTGCCCATCTCGCATTCGCGCTTCGTGTACGGCTTCTGGGCACTGTCCAGACTCAAGAGGGGGGCATGGGAGGAACGGATGTCCGTGTTCATGAGATTTGGGGTTTCCAGGAGCGAGTTGCTCAAGGCATTCAGGGAGCAGCCCGGTATACTAGTGTTCACAGCTAAAACTATCCAGCGGAAGCTCAGTTTCTACCAGGAAAAGCTGAAGGTTGCACCGGCAGATGTGATTGCACATCCTCTTCTCTTGACGTTCAGCTTGGAGAAGAACATCATACCTAAATGTGCCGTGCTGAATGTGCTATTGAGGGAGGGGAAGATTAAGAGATATGGGAGAGAGATGGACTTGTTGAGACCCTTGCAGCGTAGCAATATAAGTTTCTTTGAGAGATTTGTGAGGAAGTATGAGGAAGATGTGCCAGATGTTGTAAAAGCGTACGAGGGGAAGATTAAGTTCACGGGATTCATGGATTAGGATGTCAATGTTTGATTATGCTGAGGCCAAGGCGCCAGCTTTCTAGGGTGTATTCTCTGTAGCCTGTAGGTAAGGCTAAAATTGTCGTCAAATTAATGCATATTGCTTCCTCCTTT                                               ]
[+] EMBL CA767463             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aggggGATGTCACCCGACCGCATTGACGGGATCTTTGGGGACCTGGAGGCGCTCGAGGTGCCCATCTCGCATTCGCGCTTCGTGTACGGCTTCTGGGCACTGTCCAGACTCAAAAGGGGGGCATGGGAGGAACGGATGTCCGTGTTCATGAGATTTGGGGTTTCCAGGAGCGAGTTGCTCAAGGCGTTCAGGGAGCAGCCTGGTATACTAGTGTTCACAGCTAAAACCATCCAGCGGAAGCTCAGTTTCTACCAGGAAAAGCTGAAGGTTGCACCGGCAGATGTGATTGCGCATCCTCTTCTCTTGACGTTCAGCTTGGAGAAGAACATCATACCTAAATGTGCCGTGCTGAATGTGCTATTGAGGGAGGGGAAGATTAAGAGATATGGGAGAGGGATGGACTTGTTGAGACCATTGCAGCGTAGCAATGCAAGTTTCTTTGAGAGATTTGTGAGGAAGTATGAGGAAGATGTGCCAGATGTTGTAAAAGCGTACGAGGGGAAGATTAAGTTCACGGGATTCATGGATTAGGATGTCAATGTTTGATTATGCTGAGGCCAAGGCGCCAGCTTTCTAGGGTGTATTCTCTGTAGCCTGTAGGTAAGGCTAAAATTGTCGTCAAATTAATGCATATTGCTTCCTCCTTTTTTTTGAACTAACTAACATCATATAAATGAAAATGGAGGTAGTACAT]


>consensus_3400#0 AAATCCCAGGCATGTTCCCCACAGCCGGCGGCCGCCGGCTCCTCGTCCTCATCCGCCGCG CCTCCGCCGCCGCCGCGGCCGGCGCAAACCCTAACCACCACCACCACCACGCCACGCTTT TCACCCATCGCTACTCTTCGTCCCCCCTAGCAAGAACCCCTGAGGCGGAATCCGCCGCCG CGGCCTCCTACCTCGTCGCCTCCGTCGGCCTCTCCCCGGCCGCCGCCGCCAGGATCTCCC GCAAGGCACGCTTCCGTTCCAACGCCGACGCCGAAGCCGTCGTCTCCCTCCTCCGCGGCC ACGGCTTCTCCGACGCCAACATCGCGCAGGTGCTCCCAAAAATCCCGGGCCTCCTCATCC TCAACCCGGACAAGATCCTCCGGCCAAAGCTCGAGTACTTCGCCTCCCTCGGGGTGGTCC CCTCGGCACTGTCCCGCGCACCCCTCCTCGCGCGCAGCCAGGAGAAGCACCTCGTCCCGT GCGTCGAGTTCATCCGCGGCGTCGTTGGCACCGACGCCAACCTCTGCGCGGCCATCTCCC GGAACCCCTGGGCACTCTGGTGCGACATTAACAGCAGCATGCGCCCCGCCGTGGAATCCC TTCGCCGCCACGGCCTCGCTGAGGCGAACATCTCCAGGCTCGTCGTCATCAATCTCAGCG CTCTCACGATGTCACCCGACCGCATTGACGGGATCTTTGGGGACCTGGAGGCGCTCGAGC TGCCCATCTCGCATTCGCGCTTCGTGTACGGCTTCTGGGCACTGTCCAGACTCAAGAGGG GGGCATGGGAGGAACGGATGTCCGTGTTCATGAGATTTGGGGTTTCCAGGAGCGAGTTGC TCAAGGCATTCAGGGAGCAGCCCGGTATACTAGTGTTCACAGCTAAAACTATCCAGCGGA AGCTCAGTTTCTACCAGGAAAAGCTGAAGGTTGCACCGGCAGATGTGATTGCACATCCTC TTCTCTTGACGTTCAGCTTGGAGAAGAACATCATACCTAAATGTGCCGTGCTGAATGTGC TATTGAGGGAGGGGAAGATTAAGAGATATGGGAGAGAGATGGACTTGTTGAGACCCTTGC AGCGTAGCAATATAAGTTTCTTTGAGAGATTTGTGAGGAAGTATGAGGAAGATGTGCCAG ATGTTGTAAAAGCGTACGAGGGGAAGATTAAGTTCACGGGATTCATGGATTAGGATGTCA ATGTTTGATTATGCTGAGGCCAAGGCGCCAGCTTTCTAGGGTGTATTCTCTGTAGCCTGT AGGTAAGGCTAAAATTGTCGTCAAATTAATGCATATTGCTTCCTCCTTTTTTTTGAACTA ACTAACATCATATAAATGAAAATGGAGGTAGTACAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)