cluster # 3406

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Oryza sativa
cluster # 3406 cluster # 3406 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3406#0 length = 508 sequences # 1

consensus_3406#1 length = 460 sequences # 1

consensusID : consensus_3406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATGACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA]

[+] EMBL AK109235             [TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATGACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA]




>consensus_3406#0
TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGG
GACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCG
TGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGG
CGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCT
GCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATAGA
CGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGA
CTTTCTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTC
AGGGACATCCACAAATATGATAATATGTGCCTATGACCACATCTTACCTGGAAGCAATTG
GTATTTTTTGCATTTCGTTTGAGTTAAA

consensusID : consensus_3406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATGTGAGTTGTGACCGCACCCGGTTGCTTTGCTTTGATTTGCCTTGTTTGTTCTAGTTCATCTTGTGTCTAGATTCGGCTGGGCTGATGTAATTGTTGTCGGAATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT]

[+] EMBL AK109187             [CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATGTGAGTTGTGACCGCACCCGGTTGCTTTGCTTTGATTTGCCTTGTTTGTTCTAGTTCATCTTGTGTCTAGATTCGGCTGGGCTGATGTAATTGTTGTCGGAATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT]




>consensus_3406#1
CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGC
CGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGC
TCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCC
GCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCG
GGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAAT
CTAATCTTTGCATCCTGCATGTGAGTTGTGACCGCACCCGGTTGCTTTGCTTTGATTTGC
CTTGTTTGTTCTAGTTCATCTTGTGTCTAGATTCGGCTGGGCTGATGTAATTGTTGTCGG
AATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3406#0      -----------------------TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGC 37
consensus_3406#1      CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGC 60
                                             *********************** *************

consensus_3406#0      CGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGC 97
consensus_3406#1      CGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGC 120
                      ************************************************************

consensus_3406#0      TCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCC 157
consensus_3406#1      TCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCC 180
                      ************************************************************

consensus_3406#0      GCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCG 217
consensus_3406#1      GCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCG 240
                      ************************************************************

consensus_3406#0      GGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAAT 277
consensus_3406#1      GGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAAT 300
                      ************************************************************

consensus_3406#0      CTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACT 337
consensus_3406#1      CTAATCTTTGCATCCTGCAT-GTGAGTTGTGACCGCACCCGGTTG--------CTTTGCT 351
                      ******************** *   * * * * **  **  * *         *    **

consensus_3406#0      CCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAAT--AATCGGT 395
consensus_3406#1      TTGAT-TTGCCTTGTTTGTTCTAGTTCAT----CTTGTGTCTAGATTCGGCTGGGCTGAT 406
                        * *  ****  *   *    * **  *    *** *** *   ***         * *

consensus_3406#0      TTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATG 455
consensus_3406#1      GTAATTGTTGTCGG--AATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT---- 460
                       *****  *** *     * *  * **    *  **  ****  ** * **  *      

consensus_3406#0      ACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA 508
consensus_3406#1      -----------------------------------------------------