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Oryza sativa
cluster # 3408 cluster # 3408       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3408#0 length = 1171 sequences # 1  
consensus_3408#1 length = 791 sequences # 1  

consensusID : consensus_3408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1171
fasta sequence
                              [GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT]

[+] EMBL AK069945             [GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT]


>consensus_3408#0 GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATAT TGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA CGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATC TTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGG TTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAA GGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTT GCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCA ATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCT ATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATA ACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGAT GTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATAT TGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGAT ATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGAT GCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAA ACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAAC ATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAA TATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGT AGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAAT TGACGCATAATTGTTCCAATGTCATTCAAAT



consensusID : consensus_3408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 791
fasta sequence
                              [GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC]

[+] EMBL CA767536             [GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC]


>consensus_3408#1 GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAG AGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGA TGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCC TATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGG CAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGAC TTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAA GTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGG GAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTT TGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAA TCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCA TTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCT ATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTG AAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCC GTCACAGATCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3408#0      GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATAT 60
consensus_3408#1      ------------------------------------------------------------
                                                                                  

consensus_3408#0      TGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 120
consensus_3408#1      -------GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 53
                               * **      *****************************************

consensus_3408#0      CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 180
consensus_3408#1      CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 113
                      ************************************************************

consensus_3408#0      CGAGGGATGAAGCT---TGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 237
consensus_3408#1      CGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 173
                      **************   *******************************************

consensus_3408#0      ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 297
consensus_3408#1      ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 233
                      ************************************************************

consensus_3408#0      CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCC 357
consensus_3408#1      CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCC 293
                      ****************************************** *****************

consensus_3408#0      GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 417
consensus_3408#1      GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 353
                      ************************************************************

consensus_3408#0      TTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAG 477
consensus_3408#1      TTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAG 413
                      **************** ************************** ****************

consensus_3408#0      TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 537
consensus_3408#1      TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 473
                      ************************************************************

consensus_3408#0      GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 597
consensus_3408#1      GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 533
                      ************************************************************

consensus_3408#0      ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 657
consensus_3408#1      ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 593
                      ************************************************************

consensus_3408#0      GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 717
consensus_3408#1      GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 653
                      ************************************************************

consensus_3408#0      TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 777
consensus_3408#1      TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 713
                      ************************************************************

consensus_3408#0      GATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGG-TGGTGA 836
consensus_3408#1      GATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGA 773
                      ************************* *************************** ******

consensus_3408#0      TGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGA 896
consensus_3408#1      TGATGCCGTCACAGATCC------------------------------------------ 791
                      ******************                                          

consensus_3408#0      CAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAG 956
consensus_3408#1      ------------------------------------------------------------
                                                                                  

consensus_3408#0      CAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTC 1016
consensus_3408#1      ------------------------------------------------------------
                                                                                  

consensus_3408#0      ATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTG 1076
consensus_3408#1      ------------------------------------------------------------
                                                                                  

consensus_3408#0      ATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGT 1136
consensus_3408#1      ------------------------------------------------------------
                                                                                  

consensus_3408#0      CAATTGACGCATAATTGTTCCAATGTCATTCAAAT 1171
consensus_3408#1      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)