These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1171 fasta sequence [GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT] [+] EMBL AK069945 [GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT] consensusID : consensus_3408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC] [+] EMBL CA767536 [GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3408#0 GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATAT 60 consensus_3408#1 ------------------------------------------------------------ consensus_3408#0 TGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 120 consensus_3408#1 -------GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 53 * ** ***************************************** consensus_3408#0 CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 180 consensus_3408#1 CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 113 ************************************************************ consensus_3408#0 CGAGGGATGAAGCT---TGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 237 consensus_3408#1 CGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 173 ************** ******************************************* consensus_3408#0 ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 297 consensus_3408#1 ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 233 ************************************************************ consensus_3408#0 CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCC 357 consensus_3408#1 CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCC 293 ****************************************** ***************** consensus_3408#0 GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 417 consensus_3408#1 GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 353 ************************************************************ consensus_3408#0 TTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAG 477 consensus_3408#1 TTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAG 413 **************** ************************** **************** consensus_3408#0 TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 537 consensus_3408#1 TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 473 ************************************************************ consensus_3408#0 GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 597 consensus_3408#1 GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 533 ************************************************************ consensus_3408#0 ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 657 consensus_3408#1 ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 593 ************************************************************ consensus_3408#0 GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 717 consensus_3408#1 GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 653 ************************************************************ consensus_3408#0 TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 777 consensus_3408#1 TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 713 ************************************************************ consensus_3408#0 GATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGG-TGGTGA 836 consensus_3408#1 GATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGA 773 ************************* *************************** ****** consensus_3408#0 TGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGA 896 consensus_3408#1 TGATGCCGTCACAGATCC------------------------------------------ 791 ****************** consensus_3408#0 CAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAG 956 consensus_3408#1 ------------------------------------------------------------ consensus_3408#0 CAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTC 1016 consensus_3408#1 ------------------------------------------------------------ consensus_3408#0 ATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTG 1076 consensus_3408#1 ------------------------------------------------------------ consensus_3408#0 ATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGT 1136 consensus_3408#1 ------------------------------------------------------------ consensus_3408#0 CAATTGACGCATAATTGTTCCAATGTCATTCAAAT 1171 consensus_3408#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||