These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1715 fasta sequence [CATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAGAGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTGTTTTGCTTTCTGACAGTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTCGAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGCAATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAGGCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTTGCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGTTGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGAACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAAAGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGCAAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCATTTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCTTTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAGTATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTATATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCTGGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTATCCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCTTGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA] [+] EMBL AK071700 [CATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAGAGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTGTTTTGCTTTCTGACAGTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTCGAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGCAATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAGGCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTTGCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGTTGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGAACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAAAGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGCAAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCATTTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCTTTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAGTATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTATATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCTGGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTATCCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCTTGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA] consensusID : consensus_3410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGCATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGGTGGCCGAGACATACACAGTGATACNGACAACCNACTATTTGGTTTTGCTTTCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATCAAGANACAGNTTTCTTGACTGCTTTG] [+] EMBL CA767558 [GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGCATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGGTGGCCGAGACATACACAGTGATACNGACAACCNACTATTTGGTTTTGCTTTCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATCAAGANACAGNTTTCTTGACTGCTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3410#0 -----------------------------------------------------------C 1 consensus_3410#1 GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGC 60 * consensus_3410#0 ATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAG 61 consensus_3410#1 ATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAG 120 ************************************************************ consensus_3410#0 AAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATG 121 consensus_3410#1 AAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATG 180 ***************** ****************************************** consensus_3410#0 AAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCAT 181 consensus_3410#1 AAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCAT 240 ************************************************************ consensus_3410#0 CAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGC 241 consensus_3410#1 CAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGC 300 ******************************************** *************** consensus_3410#0 ACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTAT 301 consensus_3410#1 ACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTAT 360 ************************************************************ consensus_3410#0 ACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTC 361 consensus_3410#1 ACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTC 420 ************************************************************ consensus_3410#0 CTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGAC 421 consensus_3410#1 CTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGAC 480 ************************************************************ consensus_3410#0 AAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGA 481 consensus_3410#1 AAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGA 540 ************************************************************ consensus_3410#0 CTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGA 541 consensus_3410#1 CTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGA 600 ************************** ******** ************************ consensus_3410#0 GGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTG 601 consensus_3410#1 GGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTG 660 ************************************************************ consensus_3410#0 TTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAG 661 consensus_3410#1 GTGGCCGAGACATACACAGTGATA------------------------------------ 684 *********************** consensus_3410#0 AGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTG-TTTTGCTT 720 consensus_3410#1 ---------------------------------CNGACAACCNACTATTTGGTTTTGCTT 711 * ******* ******** ******** consensus_3410#0 TCTGACAGTTGTG-TTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATC 779 consensus_3410#1 TCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATC 771 ******** **** ***** ****************** *** ***************** consensus_3410#0 AAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTC 839 consensus_3410#1 AAGANACAGNTTTCTTGACTGCTTTG---------------------------------- 797 **** **** **************** consensus_3410#0 GAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGC 899 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 AATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAG 959 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 GCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTT 1019 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 GCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGT 1079 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 TGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGA 1139 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 ACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAA 1199 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 AGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGC 1259 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 AAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCAT 1319 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 TTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCT 1379 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 TTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAG 1439 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 TATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTAT 1499 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 ATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCT 1559 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 GGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTAT 1619 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 CCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCT 1679 consensus_3410#1 ------------------------------------------------------------ consensus_3410#0 TGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA 1715 consensus_3410#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||