These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1105 fasta sequence [TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTGTACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATGGGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCATGTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTACGAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAGGGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTACCTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTCCTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGGGAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCGGAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTGCTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGACAAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACCTCCACTCACATCTCACATCACATCACTTAATTACTTCTTCCAAAAATTCTTTGCTAACTACTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATTTAAAAAAAATATGATTAGTA] [+] EMBL AK109632 [TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTGTACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATGGGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCATGTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTACGAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAGGGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTACCTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTCCTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGGGAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCGGAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTGCTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGAGCCAGGAGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAGACGGAGGCGGTGGTGGCGCGGGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGACAAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGACCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACCGTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCCTCGCTGTTACACACGGATGACACCACTGGAGGCACCACCTCCACTCACATCTCACATCACATCACTTAATTACTTCTTCCAAAAATTCTTTGCTAACTACTCCCTCAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATTTAAAAAAAATATGATTAGTA] consensusID : consensus_3419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1031 fasta sequence [AAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGCGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTTAGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATTTGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAATT] [+] EMBL AK109273 [AAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGCGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAACGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAGGCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTTAGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCGGTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATGTGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATTTGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3419#0 TTGCGGGAAATGACTGGCGACTACGCGGAGAGGCTTGGCGCCGGGGGTTTCGGGGTGGTG 60 consensus_3419#1 ------------------------------------------------------------ consensus_3419#0 TACAAAGGGCAGATCCCCGGCGGTCTGGCAGTGGCCGTGAAGGTCCTTGGTAGCGACATG 120 consensus_3419#1 ------------------------------------------------------------ consensus_3419#0 GGGAGGCGCGCAGAGGAGCAGTTCATGGCGGAGATCGGCACCATCGGTAGGACGTCGCAT 180 consensus_3419#1 ------------------------------------------------------------ consensus_3419#0 GTCAACCTCGTCATGCTCTACGGCTTCTGCTTCGACGCCGACCTCAAGGCGCTTGTGTAC 240 consensus_3419#1 ------------------------------------------------------------ consensus_3419#0 GAGTGCATGCCCAAGGGCTCGCTGGAGCGCTACCTGTTCTTCCTCGACGAACAGGAGCAG 300 consensus_3419#1 ------------------------------------------------------------ consensus_3419#0 GGCCTCGGCTTCCACAAGCTGTTCCGCATCGCCGTTGGGACTGCCAAGGCGATCCGGTAC 360 consensus_3419#1 ---------------------------------------------AAGGCGGTGCGGTAC 15 ****** * ****** consensus_3419#0 CTCCACGACGAGTGCGCGCGGCGGATCATCCACTACGACATCAAGCCCGGCAATGTACTC 420 consensus_3419#1 CTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTC 75 ** ***** ********** *************************** * ** ** *** consensus_3419#0 CTGGACGAGGAGTTGGAGCCCAAGGTGGGGGACTTCGGGCTGGCGAGGCTGTGCGACAGG 480 consensus_3419#1 CTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGG 135 ** * ** * * *** ********** *********** ** * ************* consensus_3419#0 GAGAAGACGCACCTGACGATGACGGGCGGCGGGAGGGGCACCCCGGGCTACGCGGCGCCG 540 consensus_3419#1 GAGGACACCCACCTGACCATCAC---CGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCG 192 *** * ** ******** ** ** ***** * * *********** ************ consensus_3419#0 GAGCTGTGGAAGCCGGTGCCGGTGACGCACAAGTGCGACGTGTACAGCTACGGCATGTTG 600 consensus_3419#1 GAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTG 252 ********** **** * ** ******************************** *** ** consensus_3419#0 CTGTTCGAGATCCTGGGCTACATGCATGGTATGGAGA-----GCCAGG------------ 643 consensus_3419#1 CTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCGC 312 *********** ** ** ** ***** *** ** consensus_3419#0 -------------AGCAGTGGTATCCCCGGTGGGTGTGGCAGCGCCTGGAGCATGGCGAG 690 consensus_3419#1 GGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAG 372 ** ******* ** ************** ** * *** ****** consensus_3419#0 ACGGAGGCGGTGGTGGCGCG------GGCGCGGGCGCAGGGAGGCGCCGCCGCCGCCGAC 744 consensus_3419#1 ACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAG 432 ******** *** ******* **** **** *** **** * ** consensus_3419#0 AAGGCGGAGCGGATGTGCACGGTGGCCCTCTGGTGCGTGCAGTACAGGCCGGAGGACCGA 804 consensus_3419#1 AAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGG 492 ********* ** ****** ****** ** *************************** * consensus_3419#0 CCGTCCATGGCCAGCGTGGTTCAGATGCTAGAGGCCCATGACCACGTCGCAGCGCCCACC 864 consensus_3419#1 CCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCC--GC 550 ********** ** *** ** * ****** ** * * ****** **** ***** * consensus_3419#0 GTCAGCCCCTTTGCTCATCTCGACCCCCAAGTCATCATCACCACTTCCTCTTTCTCC--- 921 consensus_3419#1 G-CAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACT 609 * ** *** ** ** ** **** ** * * * * * * ** * * ** consensus_3419#0 -TCGCTGTTACACA--CGGATGACACCACTGGAGGCACCACCTC-CACTCACATCTCACA 977 consensus_3419#1 ACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAGACGTGTCGGAAA 669 *** ** * ****** * * * * *** * * * ** * * consensus_3419#0 TCACATCAC-TTAATTACTTCTTCCAAAAATTCTT--------TGCTAACTACTCCCT-- 1026 consensus_3419#1 CGAATTCCCGTTTTCTGATTCTTCCACGTTTGCACAGCACGGGTGTGAGTTGTCAGCTAG 729 * ** * ** * ******** * * ** * * ** consensus_3419#0 -CAATTCCATTTTAAGTGCAATATTAGATTTCATGCACAACTTTAATTATTCGTCTTATT 1085 consensus_3419#1 GCTGTTGTGTTCAAAGACGTACACCTACTGATGTGTATAAGTGCATGTCTACAACATTTT 789 * ** ** *** * * * ** * ** * * * * * * * ** consensus_3419#0 TAAAAAAAATATGATTAGTA---------------------------------------- 1105 consensus_3419#1 AGTGTGTTAGACTGTTATAGTGCCGTATTTGTTCCGCTAATTTTGGTTTTAAACGTTTCG 849 * * *** consensus_3419#0 ------------------------------------------------------------ consensus_3419#1 GTGTGACTCAATTCGACTCTGCAGTCTGTACTCTGTAGCGAGGAAGATGGGTTAGACATG 909 consensus_3419#0 ------------------------------------------------------------ consensus_3419#1 TGGGCCCTGACTGTCATTGGGAGGATCAGAGGTAGAGGAGGATCGATTTTGCTATATATT 969 consensus_3419#0 ------------------------------------------------------------ consensus_3419#1 TGTTGACAATTTTTCTCTCTGAAATTTAACATATGTAAATACAGTGTGATCATAGTGTAA 1029 consensus_3419#0 -- consensus_3419#1 TT 1031 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||