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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 982 fasta sequence
[GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAGCGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTCGCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAACATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGTAGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGGCATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGGGACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT]
[+] EMBL AK061060 [GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAGCGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTCGCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAACATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGTAGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGGCATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGGGACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT]
consensusID : consensus_342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAATCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC]
[+] EMBL CA755559 [GCCACCGCGCCGCCGCTCGCCGCCGGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGCGGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCATGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCCACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCAGAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGCCTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAAAGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTTCGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTATTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGTGCTTGCTCCAGTGCGAGCAAATCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_342#0 GTGCAGCTGCCGTTGCCGACCTCGCGCTCGCCGCAGGCCACCGCGCCGCCGCTCGCCGCC 60
consensus_342#1 ------------------------------------GCCACCGCGCCGCCGCTCGCCGCC 24
************************
consensus_342#0 GGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGC 120
consensus_342#1 GGCGCCGCACGCCGTACTGGGGGGGAGAGGGATTCGGAGAGATGCCTCCGAAGCGGCAGC 84
************************************************************
consensus_342#0 GGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCA 180
consensus_342#1 GGTCGGCGGCGGGGCCGTCGGGGGAGGCGCCGGTCAACAGCCTGGACGACGGCTGCCTCA 144
************************************************************
consensus_342#0 TGCACATCTTCAGCTTCCTCAGCCCAATCCCAGAT------------------------- 215
consensus_342#1 TGCACATCTTCAGCTTCCTCAGCCCAATCCCAGATAGGTATAACACCGCCCTCGTTTGCC 204
***********************************
consensus_342#0 ------GGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCA 269
consensus_342#1 ACAGATGGCGCTTCCTTGCATGCCATCCTCGACTGTGGTTGCGTGTTGAGAGGCCAATCA 264
******************************************************
consensus_342#0 GAAATACAATAGAGCCAGGAGTCTATCCAAATCTTGAGTCTGCTGTTTCTGCAGCTAGGC 329
consensus_342#1 GAAATACAATAGAGCCAGGAGTCTATCCNAATCTTGAGTCTGCTGTTTCTGCAGCTAGGC 324
**************************** *******************************
consensus_342#0 CTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAA 389
consensus_342#1 CTGGGGATACTATTCTAATTGCTGCTGGTGGCACACATGTTGCACGTAATATCCAAATAA 384
************************************************************
consensus_342#0 AGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTT 449
consensus_342#1 AGAAGCCTCTCTGCATTATTGGCGGGGGTGAGCTTCCTGACGACACAGTGTTAACATGTT 444
************************************************************
consensus_342#0 CGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTA 509
consensus_342#1 CGCGTGGCTCTGACAATGCGTTGGAGTTCCATTCCACCTGCAAGATTGCAAATCTCACTA 504
************************************************************
consensus_342#0 TTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCGAAGTGGTAGATTAACTATTGAGGAGT 569
consensus_342#1 TTAGAGCAGAGCTTGGGTGTTGTTTGCTTCATCNGAGTGGTAGATTAACTATTGAGGAGT 564
********************************* *************************
consensus_342#0 GCTTGCTCCAGTGCGAGCAAAATCCTCTGGATTATTTGTCCTTCCCTATAATTAGCACAG 629
consensus_342#1 GCTTGCTCCAGTGCGAGCAAA-TCCTCTGGATTATNTGTCCTTCCCTATAATTAGCAC-- 621
********************* ************* **********************
consensus_342#0 CGATTGAGTATGATTCGTTCTCATCACTCAAGGAGCAAGGACATGGTGTAACTGTTGTTC 689
consensus_342#1 ------------------------------------------------------------
consensus_342#0 GCACCCGCATTGAGGGGGGTGCGAAGGCCGTCAGGACTAATGGAACACTGGCGCTGCAAC 749
consensus_342#1 ------------------------------------------------------------
consensus_342#0 ATGTGCGGGCTATCTATTCTCGCAGTTCTGTTTTCTTCTGGTTCGAAGTAGGAGAAAGGT 809
consensus_342#1 ------------------------------------------------------------
consensus_342#0 AGGAATTCATGTAAACCTGTAAGGCCATGGCCATGTATCCTATCCAGTATCAACTCTTGG 869
consensus_342#1 ------------------------------------------------------------
consensus_342#0 CATTGTCTGCCTCCTGTTTGTTGTAACATATGATAAATATTTTCTATTTGGATCAACAGG 929
consensus_342#1 ------------------------------------------------------------
consensus_342#0 GACACTAGTTACAAGTTAACTGCATAAAGTTTGATAATTTCATAAACTTAGCT 982
consensus_342#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||