These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence [ACAAGAAAACCAAAACAGCAACCAATCAACAAGCGATCGAGCACCTTCGCCGCCGTTGAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACGGAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCTTTCTAAATGGAAAAAGGGCT] [+] EMBL AK111090 [ACAAGAAAACCAAAACAGCAACCAATCAACAAGCGATCGAGCACCTTCGCCGCCGTTGAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAGCGGCCACGTCGACGAGTTCAGCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCACCCCAACCACACGCTCACCACCACGTGGTCCTCCGCCGGCGTCGGGTGCCCCACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCGGCGACCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTCCAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGCCGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGCGTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCTCGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACGGAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCTTTCTAAATGGAAAAAGGGCT] consensusID : consensus_3422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGCCGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTGCTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAGCGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCACCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCCCTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGAAGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGCGGCTCCGCCGCCGCGGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGACGAGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCTGGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTTGACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTGTGAATATGAACGGTGGATGA] [+] EMBL AK109305 [CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGCCGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTGCTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAGCGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCACCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCCCTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTTCCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGAAGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGCGGCTCCGCCGCCGCGGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGACGAGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCTGGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTTGACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTGTGAATATGAACGGTGGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3422#0 -----ACAAGAAAACCAAAACAGC-----AACCAATCAACAAGCGATCGAGCACCTTCGC 50 consensus_3422#1 CTCAGCCACGGTCTCCTCCTCCTCCTTCCATCTGATCCACCTGTACGTACGCAGCTCAGC 60 ** * ** * * * * *** ** * *** ** ** consensus_3422#0 CGCCGTT------GAAGACGACGACGACGACGACTCCGGCATGGGCAACAGCCTGCGGTG 104 consensus_3422#1 CGCCGGCCGGCGAGAAGGAGAAGAAGCTAGCCAGCCAGCCATGGGGAACAGCCTGCGCTG 120 ***** **** ** ** * * * * * ****** *********** ** consensus_3422#0 CTGCCTGGCCTGCGTCCTCCCCTGCGGAGCGCTCGACGTCGTCCGCATCGTCCACCTCAG 164 consensus_3422#1 CTGCCTGGCCTGCATGCTCCCCTGCGGCGCCCTCGACGTCGTCCGCGTCGTGCACCTCAG 180 ************* * *********** ** *************** **** ******** consensus_3422#0 CGGCCACGTCGACGAGTTCA---GCTGCCCGGTCACCGCCGGCGCCGTCCTCGCCGCTCA 221 consensus_3422#1 CGGCCGCGTCGACGAGTTCACCAGCTGCCCGCTCACCGCGGCCGACGTCCTCGCCGCGCA 240 ***** ************** ******** ******* * ** ************ ** consensus_3422#0 CCCCAACCACACGCTCACCACCACGTGGTCCTC------CGCCGGCGTCGGGTGC---CC 272 consensus_3422#1 CCCCAACCACGCGCTCACCGCCGCCTGGTCGCCGGGCGGCGCCGGCGCCGGCGGCGCGCC 300 ********** ******** ** * ***** * ******** *** ** ** consensus_3422#0 CACCAAGAAGCTCGTCATCGTCTCGCCCGACTCCGAGCTCAAGCGCGGCCGCATCTACTT 332 consensus_3422#1 CTGCAGGAAGATCGTCATCGTGTCCCCGGACTCCGAGCTCAAGCGCGGCCGCATCTACTT 360 * ** **** ********** ** ** ******************************** consensus_3422#0 CCTCATCCCCTCGGCGA---CCCTGCCGGCCGACAGGAGGAAGAAGAGCCGGCAGAGCTC 389 consensus_3422#1 CCTCATCCCCTCCGCGTGCTCCGCGCCCGCCGCCGACAAGATGATGACCCGCCGGA---- 416 ************ *** ** *** **** * * ** ** ** *** * ** consensus_3422#0 CAACAAGAAGAGCAAGCGGCCGAGCCACCACCATCACAAGAGCAACGGCGCGGCGACGGC 449 consensus_3422#1 --AGAAGAAGAAGCGCTGCCACGGCAACGGCAATGGCAAGGGC---GGCTCCGCCGCCGC 471 * ******* * * ** ** * ** **** ** *** * ** * ** consensus_3422#0 CGCGAGCACGGCGGAGCAGGACAACTACCTGAGGGAGCTTCTGTCCGAGAAGACGGCGGC 509 consensus_3422#1 GGCGAGCACCGCGGAGCAGGACAACTACCTGATGGAGCTGCTGTCCGAGAAGCGGGGGAC 531 ******** ********************** ****** ************ ** * * consensus_3422#0 GTCGGGTGGCCAGCGGAGGCGGCGGAGCGGCAGTCGGGTCGGCGTGTGGCGGCCGCAGCT 569 consensus_3422#1 G------AGCCACCGCCGGCGGCGCAGCGGCGCCCGCGCCGGTGTGTGGCGGCCGCAGCT 585 * **** ** ******* ****** ** * *** ***************** consensus_3422#0 CGAGAGCATAGTGGAGGAGCAATCGGATTAATTAAGGAG--AGCTCGAAGAGCA------ 621 consensus_3422#1 GGAGAGCATAGCGGAGGAGCCATCAGACTAGCTAGGCAGCTAGCTAGTGAACCACCTTTT 645 ********** ******** *** ** ** ** * ** **** * * ** consensus_3422#0 -ATCTTCTTTTTCCACTCATATATATTCTTTTGGTTTTCTTTCT----GATCTTCCGATG 676 consensus_3422#1 GACCATTTTTTTTCCTTCTTTTTTTTTCTCTTCGTTTCTTCTCCTCTCGATCTTCCGCTG 705 * * * ***** * ** * * * **** ** **** * ** ********* ** consensus_3422#0 TGAATACCA-CGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCATG 735 consensus_3422#1 TGAATATGAACGGTGGATGA---------------------------------------- 725 ****** * ** ** * consensus_3422#0 TATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACG 795 consensus_3422#1 ------------------------------------------------------------ consensus_3422#0 GAATAAATGTAAAAAGAGCCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCT 855 consensus_3422#1 ------------------------------------------------------------ consensus_3422#0 TTCTAAATGGAAAAAGGGCT 875 consensus_3422#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||