These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTACTCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCTAGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAAATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGC] [+] EMBL AU173821 [GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTACTCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCTAGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAAATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGC] consensusID : consensus_3424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CCGAGGCGCTGGCGGCGGCGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCACCCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCC] [+] EMBL CB640197 [CCGAGGCGCTGGCGGCGGCGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCACCCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3424#0 GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTAC 60 consensus_3424#1 ------------------------------------------CCGAGGCGCTGGCGGCGG 18 ** * consensus_3424#0 TCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCT 120 consensus_3424#1 CGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGG 78 * * ** * ** * * *** * * * * consensus_3424#0 AGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAA 180 consensus_3424#1 AGACGCTGGCGC---TGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCA 135 ** ** ** * ** ** * * * * * ** * * * consensus_3424#0 ATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACC 240 consensus_3424#1 CCC--TCAAGGGCCCGCTCTGGG-AGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACC 192 * ** * *** * * * * * *********************** consensus_3424#0 GGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCA 300 consensus_3424#1 GGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCA 252 ************************************************************ consensus_3424#0 CCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCG 360 consensus_3424#1 CCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCG 312 ************************************************************ consensus_3424#0 AGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGG 420 consensus_3424#1 AGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGG 372 ************************************************************ consensus_3424#0 CCCCGCCGC 429 consensus_3424#1 CCCC----- 376 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||