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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3434 cluster # 3434       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3434#0 length = 380 sequences # 1  
consensus_3434#1 length = 308 sequences # 1  

consensusID : consensus_3434#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence
                              [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT]

[+] EMBL CA998420             [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT]


>consensus_3434#0 GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTT CGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTT GAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTT CTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCT GCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCAC GGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGA TCACTGGACTGTTGGAGCAT



consensusID : consensus_3434#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence
                              [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT]

[+] EMBL CA998356             [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT]


>consensus_3434#1 TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTAT CTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCT TTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTT TTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGG AGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAA TCACGGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3434#0      GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTT 60
consensus_3434#1      TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTAT 60
                        *********************************** ***************** ** *

consensus_3434#0      CGTATAAG-ATTTCTAA-TAATCAGTATAGGCATTT-TTGTTTCTGGTTTTGGATTATCT 117
consensus_3434#1      CTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCT 120
                      *  ****  ******** ******* ********** ********** * **********

consensus_3434#0      TTT-GAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTT 176
consensus_3434#1      TTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTT 180
                      *** ** ************** * ** ***  *  ****** ******************

consensus_3434#0      TTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGG 236
consensus_3434#1      TTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGG 240
                      *** ********** ** ************************ *****************

consensus_3434#0      AGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAA 296
consensus_3434#1      AGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAA 300
                      **************** * *******************  ********************

consensus_3434#0      TCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGAT 356
consensus_3434#1      TCACGGGT---------------------------------------------------- 308
                      ****** *                                                    

consensus_3434#0      TGGATCACTGGACTGTTGGAGCAT 380
consensus_3434#1      ------------------------
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)