These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT] [+] EMBL CA998420 [GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTTCGTATAAGATTTCTAATAATCAGTATAGGCATTTTTGTTTCTGGTTTTGGATTATCTTTTGAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTTTTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAATCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGATTGGATCACTGGACTGTTGGAGCAT] consensusID : consensus_3434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT] [+] EMBL CA998356 [TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTATCTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCTTTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTTTTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGGAGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAATCACGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3434#0 GTATGCTTTATCACTAGCCAACATCCATTTGATACTAGGTCCTGGTACTCGATCAGGTTT 60 consensus_3434#1 TGATGCTTTATCACTAGCCAACATCCATTTGATACTATGTCCTGGTACTCGATCACGTAT 60 *********************************** ***************** ** * consensus_3434#0 CGTATAAG-ATTTCTAA-TAATCAGTATAGGCATTT-TTGTTTCTGGTTTTGGATTATCT 117 consensus_3434#1 CTCATAATCATTTCTAAGTAATCAGCATAGGCATTTGTTGTTTCTGGGTGTGGATTATCT 120 * **** ******** ******* ********** ********** * ********** consensus_3434#0 TTT-GAGGATCTGTTTGCTTCGATTCAATCAAAGTGATTTAGTGCTGATGTCCATCTTTT 176 consensus_3434#1 TTTAGACGATCTGTTTGCTTCAAATCGATCTGAACGATTTACTGCTGATGTCCATCTTTT 180 *** ** ************** * ** *** * ****** ****************** consensus_3434#0 TTTTCTATGAGAAAGAGTGAATCAATCATGATGCCATAATGCATGCTAACGATGAGCAGG 236 consensus_3434#1 TTTGCTATGAGAAAAAGCGAATCAATCATGATGCCATAATGCCTGCTAACGATGAGCAGG 240 *** ********** ** ************************ ***************** consensus_3434#0 AGCTGCGCCTAGAAGCACAAGCTTCACAAGTGATACTCAGAAGCTTTATGTTTATGCCAA 296 consensus_3434#1 AGCTGCGCCTAGAAGCGCGAGCTTCACAAGTGATACTCCTAAGCTTTATGTTTATGCCAA 300 **************** * ******************* ******************** consensus_3434#0 TCACGGTTCAGGGATACTCAGAAGTTGTCTCAGTTTCTCTGTTGCTACATCTGTATGGAT 356 consensus_3434#1 TCACGGGT---------------------------------------------------- 308 ****** * consensus_3434#0 TGGATCACTGGACTGTTGGAGCAT 380 consensus_3434#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||