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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3455 cluster # 3455       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3455#0 length = 607 sequences # 1  
consensus_3455#1 length = 432 sequences # 1  

consensusID : consensus_3455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA]

[+] EMBL AK111133             [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA]


>consensus_3455#0 GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGC GCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGG CGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCG GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCC TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAAC CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCG ATAAAAA



consensusID : consensus_3455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA]

[+] EMBL AU174006             [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA]


>consensus_3455#1 GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTG CGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGC GGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCAC GTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTT CNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATT ACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATT TAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATA AAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3455#0      GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGC 60
consensus_3455#1      ------------------------------------------------------------
                                                                                  

consensus_3455#0      GCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGG 120
consensus_3455#1      ------------------------------------------------------------
                                                                                  

consensus_3455#0      CGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCG 180
consensus_3455#1      ----------------------------------------GCTGCCGCTGCTGGCCGGCG 20
                                                              ********************

consensus_3455#0      GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCC 240
consensus_3455#1      GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCC 80
                      ****************************** ********************* *******

consensus_3455#0      TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 300
consensus_3455#1      TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 140
                      ************************************************************

consensus_3455#0      TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 360
consensus_3455#1      TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 200
                      ************************************************************

consensus_3455#0      TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAAC 420
consensus_3455#1      TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAAC 260
                      ***************************************** ******************

consensus_3455#0      CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 480
consensus_3455#1      CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 320
                      ************************************************************

consensus_3455#0      CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 540
consensus_3455#1      CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 380
                      ************************************************************

consensus_3455#0      ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCG 600
consensus_3455#1      ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA-------- 432
                      ****************************************   ** *  *          

consensus_3455#0      ATAAAAA 607
consensus_3455#1      -------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)