These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA] [+] EMBL AK111133 [GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGCGCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGGCGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCGATAAAAA] consensusID : consensus_3455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA] [+] EMBL AU174006 [GCTGCCGCTGCTGGCCGGCGGGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCCTCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCGTCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGTTCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAACCAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACTCTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTCATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3455#0 GCGAGTTCGTGTCCGTGTACGCGCAGTGCGACATCCAGGCGGCCCAGATCGAGCGCGCGC 60 consensus_3455#1 ------------------------------------------------------------ consensus_3455#0 GCGGCGGCAAGGACGCCGACGGCGGCGAGGAGGAGGAGGAGCTGCCGAGCCCAACGATGG 120 consensus_3455#1 ------------------------------------------------------------ consensus_3455#0 CGGCGGTCGCCTCGGCGCTGTCGTTCGCGGCGGGCGCCGCGCTGCCGCTGCTGGCCGGCG 180 consensus_3455#1 ----------------------------------------GCTGCCGCTGCTGGCCGGCG 20 ******************** consensus_3455#0 GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGTGGCCGTGTGCGCGGCGAGCAGTCTCGGCC 240 consensus_3455#1 GGTTCGTTCGGCCGTGGGCGGCCAGGGTCGCGGCCGTGTGCGCGGCGAGCAGCCTCGGCC 80 ****************************** ********************* ******* consensus_3455#0 TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 300 consensus_3455#1 TCGCCGGCTTCGGCGTGGCGAGCGCGTACCTCGGCGGCGCGGGCGTCGCGCGCTCCGGCG 140 ************************************************************ consensus_3455#0 TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 360 consensus_3455#1 TCCGGATGCTCGTGGGAGGGTGGCTCGCCATGGCGGTCACGTACGGGGTGCTTAAGCTGT 200 ************************************************************ consensus_3455#0 TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCACCACGTAAATAATTAAAC 420 consensus_3455#1 TCGGGATGCATGGTGTTTAACGGGCAAGTCTTTATATTTTCNCCACGTAAATAATTAAAC 260 ***************************************** ****************** consensus_3455#0 CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 480 consensus_3455#1 CAAAGGGATTATTACCAAGATACTCCCTCTGTATTCAATTACTTGTCATTGGATAATACT 320 ************************************************************ consensus_3455#0 CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 540 consensus_3455#1 CTCTCTGTTTTTTAATGACGTCGGTTTAGTTCAATGTATTTAACGATGGATGTAGTATTC 380 ************************************************************ consensus_3455#0 ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATACCTAAGAGTATCCTATATCG 600 consensus_3455#1 ATTTTCAAATTGACTCTTATTCGAAGAAAATGTATAAATAAAAAAAAAAAAA-------- 432 **************************************** ** * * consensus_3455#0 ATAAAAA 607 consensus_3455#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||