cluster # 3458

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Oryza sativa
cluster # 3458 cluster # 3458 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3458#0 length = 398 sequences # 1

consensus_3458#1 length = 275 sequences # 1

consensusID : consensus_3458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAATTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAGACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAAACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTTTTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAATTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA]

[+] EMBL CF299604             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAATTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAGACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAAACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTTTTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAATTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA]




>consensus_3458#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCCCCCC
TTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAATTTGGGGGGTAAA
AACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAGACCTTTAAAAAAA
AAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAAACAAAGGCCTTTG
AAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTTTTTTGGGTTTTTA
ACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAATTCCCCCCCCCGG
AGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA

consensusID : consensus_3458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAATTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGGTCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAAACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG]

[+] EMBL CF300633             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAATTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGGTCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAAACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG]




>consensus_3458#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA
CGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAA
TTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGG
TCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAA
ACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3458#0      ---------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-- 49
consensus_3458#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 60
                               *************************************************  

consensus_3458#0      --GGAACCCCCCCTTTTTTTTTTTGGGGAAAAAATTTATAAAAATTCCCTAAAAACCAAA 107
consensus_3458#1      CGGGAAACCCCCCATTTTTTTTATGGGCGAAAAATTTATAAAAAAGGCCCTAAAAACAAA 120
                        **** ****** ******** ****  ***************   **  **** ****

consensus_3458#0      TTTGGGGGGTAAAAACCCGGGCCTTTTTTTTAAAATTTCCCCCCCCAACAAAAATGGGAG 167
consensus_3458#1      TTTGGGGGGGAAAAACCCGGAGCTTTGTTTTCAAAAATCCCCCCCCAAAAAAAATGGGGG 180
                      ********* **********  **** **** ***  *********** ********* *

consensus_3458#0      ACCTTTAAAAAAAAAACCGCCCGGAAAGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAA 227
consensus_3458#1      TCCTTTAAAAAAAAAACCGGCCGGAAGGGGGGGGAAAAAATTTTTCCCTTTGGGTAAAAA 240
                       ****************** ****** ******************** ************

consensus_3458#0      ACAAAGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAATTTTTGCCAATTTTT 287
consensus_3458#1      ACAAAGGCCCTTGAAAGGGGCCAAACCCAAACGGG------------------------- 275
                      ********* ************ ******* ****                         

consensus_3458#0      TTTTGGGTTTTTAACAAAAATACCCCAAAAAAAAGTGGGTTTTTTTTTTTTTAGGGGGAA 347
consensus_3458#1      ------------------------------------------------------------
                                                                                  

consensus_3458#0      TTCCCCCCCCCGGAGGTTTGATTTTACTTTATTTGCCCCCAAATTCCTTCA 398
consensus_3458#1      ---------------------------------------------------