cluster # 346

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 346 cluster # 346 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_346#0 length = 1383 sequences # 1

consensus_346#1 length = 370 sequences # 1

consensusID : consensus_346#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1383
fasta sequence

                              [TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCATTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGGCAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCACGCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGTACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGATATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAGAATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAAAAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACATTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAATTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTCTTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAATTTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTAATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTTCAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTCACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAGCTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATTATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAATAATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTTGCCAT]

[+] EMBL AK107188             [TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCATTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGGCAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCACGCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGTACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGATATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAGAATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAAAAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACATTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAATTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTCTTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAATTTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTAATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTTCAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTCACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAGCTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATTATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAATAATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTTGCCAT]




>consensus_346#0
TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCA
TTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGG
CAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCAC
GCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTG
GGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGC
AGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGT
ACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGA
TATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAG
AATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAA
AAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACA
TTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAA
TTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTC
TTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAAT
TTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTA
ATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTT
CAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTC
ACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAG
CTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATACTA
CACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATTAT
TGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATC
AATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCAT
GTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAATAA
TACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTTGC
CAT

consensusID : consensus_346#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTAGCANCTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTTATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGCCATTTTATGTTTTCTAATGTGC]

[+] EMBL BE228833             [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTAGCANCTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTTATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGCCATTTTATGTTTTCTAATGTGC]




>consensus_346#1
CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCTAC
TATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTAGCANCTTGA
GGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATACTACAC
TATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTTATTGG
TTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAATCAAT
TTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGCCATTTTATGTTT
TCTAATGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_346#0      TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCA 60
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGG 120
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      CAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCAC 180
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      GCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTG 240
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      GGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGC 300
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      AGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGT 360
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      ACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGA 420
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAG 480
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      AATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAA 540
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      AAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACA 600
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAA 660
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTC 720
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAAT 780
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      TTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTA 840
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      ATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTT 900
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      CAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTC 960
consensus_346#1      -CGT-CATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCT 58
                       ** * * **   * *** **  **       ****          *      ** *  

consensus_346#0      ACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAG 1020
consensus_346#1      ACT-ATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATT-TGTTTA-GCAN 115
                     *** **    ***  *       *       * * * *    ****** ***  *   * 

consensus_346#0      CTAAATCTAAAGG--AGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATAC 1078
consensus_346#1      CTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATAC 175
                     **  *    ***        ***  *    * *  **    *******************

consensus_346#0      TACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATT 1138
consensus_346#1      TACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTT 235
                     ************************************************ * ****** **

consensus_346#0      ATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAA 1198
consensus_346#1      ATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAA 295
                     ************ ********* **** * * ****************************

consensus_346#0      TCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTC 1258
consensus_346#1      TCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGC-CATTTT 354
                     ************************************************ **** ***** 

consensus_346#0      ATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAAT 1318
consensus_346#1      ATGTTTTCTAATGTGC-------------------------------------------- 370
                     ****************                                            

consensus_346#0      AATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTT 1378
consensus_346#1      ------------------------------------------------------------
                                                                                 

consensus_346#0      GCCAT 1383
consensus_346#1      -----