These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCGAGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGTTTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATTAAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCCATGAGTTTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTGATGTAAAATGGTTAATCTTTGAAAAAAA] [+] EMBL BI804927 [GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCGAGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGTTTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATTAAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCCATGAGTTTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTGATGTAAAATGGTTAATCTTTGAAAAAAA] consensusID : consensus_3479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [CATTCTGATGCTGGAGCGGCCGCTAGGTTGTAGCAATTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGTTTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTGATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA] [-] EMBL BI305883 [CATTCTGATGCTGGAGCGGCCGCTAGGTTGTAGCAATTGTACAGCGCTCTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGTTTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGGACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGGCTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTGATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3479#0 GCGGCGCCGCGCCCAGCGCCGATCAGAGCCCAGTCCTGCGCGGCCAGCATCGGAGGCGCG 60 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 AGCGCTCGCGATGCAGCGAACGGGGAGTGGAGCCCGGCCTCAGAGCATTCCCGAAGAGGT 120 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 TTACTGAATATTATACCACGTAGATGGCGTCGTTAGTGATGGTTAATCACTTGACTAATT 180 consensus_3479#1 ------------------------------------------------------------ consensus_3479#0 AAGGTTGGGTTTTGATCACTGCCTGCTAAGTCTAAGTGGTAGATGTACTTGTACAGCGCT 240 consensus_3479#1 -------CATTCTGAT-GCTGGA-GCGGCCGCTAGGTTGTA---GCAATTGTACAGCGCT 48 ** **** *** ** *** ** *** * * ************ consensus_3479#0 CTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCCCCC---ATGAGT 297 consensus_3479#1 CTTGATTTGTTCCCGGTTACTGTTGAGGGTTAAACCGTTAATCCTCCTCCCCCAATGAGT 108 *********************************************** *** ****** consensus_3479#0 TTGTGCATTTTTTCTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGG 357 consensus_3479#1 TTGTGCATTTTTTTTTTCACTGTAAAATTTTGGATGGAAGAGAGGGGAGGTGGTGTTTGG 168 ************* ********************************************** consensus_3479#0 ACTGCA-TGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGG 416 consensus_3479#1 ACTGCAATGCAACTGCTCCTGATGGTGTTTGAGTGACTGTGAGAGTGATTCAGCGAGTGG 228 ****** ***************************************************** consensus_3479#0 CTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCCCTGCAGCTG 476 consensus_3479#1 CTGAATTTCTTCTCCTTTTTGTTTGTGGCACTGTAAAAGTTTTTACTGCCACTGCAGCTG 288 ************************************************** ********* consensus_3479#0 ATGTAAAATGGTTAATCTTTGAAAAAAA--------------------- 504 consensus_3479#1 ATGTAAAATGGTTAATTTTGAAGAATTGACAGTTTACTGTCCGTGCTTA 337 **************** ** * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||