These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGTAATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGCTTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGTGCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCGAGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATCAACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTCTGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAAATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAAATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATATTGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCATGATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT] [+] EMBL CB096839 [AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGTAATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGCTTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGTGCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCGAGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATCAACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTCTGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAAATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAAATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATATTGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCATGATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT] consensusID : consensus_3498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [AGAGGGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAATTGACACACGCTGAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATATTGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCATGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAATGCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTAAATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCTTCTCAAT] [+] EMBL CB096854 [AGAGGGGAAGATGGGGTTCTGAAGTAGCTAATCCTAAGAACCGCTGTTCCAAGTGGAAATTGACACACGCTGAGGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAAAATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTGGATGAAAGAAATATTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATATTGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCATGATACTTCCACCACCTGAACCTATTTCTACAGGTTGTGTGTTTCTGTCGTTTCTCCTTCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAATTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAATGCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTAAATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCTTCTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3498#0 AATTATTGTTTCACCTTTTTGTTTATCATGACTCAAGCTAGCCCAATTCAATCCAACTGT 60 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 AATACTAGTGTGTTTGTTTTTTATGATGATTACAAAAGCATTACTATTTCATAAACTAGC 120 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 TTGCATTATTATTGTACACAATTAGTAATAACCTATTGTTTCAGTTCCAGTTCCACTTGT 180 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 GCAATATTGGTGATAAATTGGAAATTCATAATACCGTTTCTCAGTTGTATGTAAAGTTCG 240 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 AGAGATCTTGACTGCATAGTACAATGGAACAAAAAAAATAATACATTTCATAAGTAGATC 300 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 AACGAGTAGACATTACCCATTTTTCACAATTTTAAAACTGTTGCTCATCTGCGTTATGTC 360 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 TGAGTTGTTTATTTAGTAGTCTTTTAATTTCTCTAATGTCATTGTATCTGTTGCTGTAAA 420 consensus_3498#1 ------------------------------------------------------------ consensus_3498#0 ATTGAGTTCATTATAAAGGCAGTAAGATGCCATAGATAGTGTGATGTTTGTCTTATTCAA 480 consensus_3498#1 ---------------------------------AGAGGGGAAGATGGGGTTCTGAAGTAG 27 *** * **** *** * * consensus_3498#0 ATATTTTGTGGAGTTGGGCAGAGGTTTGCTGCTGATTTCTACATAACGGATGCAAAATCA 540 consensus_3498#1 CTAATCCTAAGAACCG---------CTGTTCCAAGTG-----GAAATTGACACACGCTGA 73 ** * ** * ** * * * ** ** ** * * consensus_3498#0 GGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAA 600 consensus_3498#1 GGTAAAAGAGCCTTGGTGAAAGCTGGGCACGACTCGAGAGTAGTTCCCTTGATCGATGAA 133 ************************************************************ consensus_3498#0 AATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTG 660 consensus_3498#1 AATCTTCTGGTTACGACAAGCGGGAACACTGAGTTATCTTCAACCTTGAGGTGTTGGCTG 193 ************************************************************ consensus_3498#0 GATGAAAGAAATATTTCCTTCTGAAGAATGTCAGCTTATCCGTCTCGAANAANGGTATAT 720 consensus_3498#1 GATGAAAGAAATATT-CCTTCTGAAGAATGTCAGCTTATCCGTCTCGAAGAAGGGTATAT 252 *************** ********************************* ** ******* consensus_3498#0 TGCTGAANGTGTGCGATTGAGCGGGATCGGNANTTTAAGCAAGAAAGATGGCGATCTCAT 780 consensus_3498#1 TGCTGAAGGTATGCGATTGAGCGTGATCGGAATTTTAAGCAAGAAAGATGGCGATCTCAT 312 ******* ** ************ ****** * *************************** consensus_3498#0 GATACTTTCANCANCCGGAACCTATTTCTACAGGGTGGGGGGGTTCTGGGCGGTTTNT-- 838 consensus_3498#1 GATACTTCCACCACCTG-AACCTATTTCTACAGGTTGTGT--GTTTCTGTCGTTTCTCCT 369 ******* ** ** * * **************** ** * *** * ** ** consensus_3498#0 ------------------------------------------------------------ consensus_3498#1 TCCAACTTATTTTGATGGTATTGTTCTGAGATTAGTTGATAGAAGCTATTTTATGCACAA 429 consensus_3498#0 ------------------------------------------------------------ consensus_3498#1 TTCTGGTGTTTCGTGAACTGATGTCAGAACTCATGAGATGTAAGTGTAACAGCTAACAAT 489 consensus_3498#0 ------------------------------------------------------------ consensus_3498#1 GCTAGTGCAATGCCTTGCCCCTTGGGATCTTCTATGGGACCACAACATCATTAGAATGTA 549 consensus_3498#0 ------------------------------------------------------------ consensus_3498#1 AATTCTTACTTGATTGAAACCGCTAATGCCTTGCCCGATCTGGAAGTGTATTGGGTATCT 609 consensus_3498#0 ------- consensus_3498#1 TCTCAAT 616 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||