These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2044 fasta sequence [GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAGAAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTTGCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACCACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGGTGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCACTGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAACGCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCTTGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGCAGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTGGGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCATGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAACTCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGCTACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAAAGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCACAATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTCAGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCACAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGGAAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCTGAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGTGCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGGTGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGTATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAAAAGTTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCATCTGT] [+] EMBL AK063997 [GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAGAAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTTGCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACCACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGGTGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCACTGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAACGCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCTTGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGCAGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTGGGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCATGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAACTCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGCTACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAAAGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCACAATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTCAGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCACAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGGAAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCTGAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGTGCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGGTGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGTATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAAAAGTTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCATCTGT] consensusID : consensus_3509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAAAAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA] [+] EMBL CB097112 [GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAAGATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTACTTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTATACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGGATTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGATATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTTCTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACTAGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATATGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTGTTTTCTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATATATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAGGTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAAAAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3509#0 GCCTCACACACACTCTCCCCCTCTCTTCCCTCGCCGCCGGCAGCGGCGGCGGCGGCCGAG 60 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AAGAGCGGCTACCGGCGCTGCTACGCGCGGCGCCTGCCCCCGTTTCGTCTTGCTGGGTTT 120 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GCCGGTGTGATGTTGGTGCTATCGATTTAGAGCGGTATCTGAGTTCCTTTGGAGGAGACC 180 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 ACTGAAGTCCTATGCTACCTTGCCGAGATTTTGTACATAAGACCTTTGTAGGATGAAAGG 240 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TGGTTGTCTACAGAGACCTCTTGTCAGTAAACTATGCCTCGGCTTCGCGGCTCTCCTCAC 300 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TGCCCTGATTGTTATCATGTCACTGGAAGAAGCTCCAGTCCTCACAATCTTCAGCTCAAC 360 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GCCAGAAAAATTGAAAGTTTTATCTCAAGGTTTCCTACAGCAGCAGGAGCAGGAACATCT 420 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TGAAGATAGTACAGCCAGACAGAACGAAAATTGCAATTATGCAAAGGGAAAATGGGTGGC 480 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AGACAAGAAGCGGCCACTCTATTCTGGCAATGAGTGCAAACAGTGGCTATCGAAAATGTG 540 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GGCTTGTCGAATGATGCAACGCGCAGATTTCTCTTACGAGAATTTTCGGTGGCAGCCGCA 600 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TGGATGTCAGATGCCTGAGTTTACGGGGCCTAACATTTTGAAAAGGTTGAGGCATAAAAC 660 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TCTTGCTTTTGTTGGTGATTCTCTTGGTAGACAGCAATTTCAGTCCATGATGTGTATAGC 720 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TACAGGTGGTAAATACAGCCCAGAAGTTGAAGATGTTGGATGGAAATATGGCCTAGTTAA 780 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AGCTCCAGGTGCTTTAAGACCTGACGGATGGGCTTACTGGTTTCCAGGGACTAATTCCAC 840 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AATCCTTTTCTACTGGTCTGCTAGTCTATCTGAACTGGAACTTCTGAATACAACAGATTC 900 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AGTGACATCCTATGCATTGCATCTTGATCGTCCAGTTACATTTTTGAAGAAGTATCTCCA 960 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 CAGTTTTGATGTGTTAGTACTTAACACAGGTCATCACTGGAACAGAGGGAAGTTCAATGG 1020 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 AAATCACTGGGAACTGTACGCTGATGGGAAACCTGTAGGCAAAGGTAGACTTGCAGATCT 1080 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GAACCGTGCAAAAAATCTTACATTGTACAGCATTGCCAGATGGGTGGATTCAGAACTTGT 1140 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GCGATATCCTCAAGTGAAAGCTTTCCTGAGGACAATATCACCCAGGCATTTTGTAAATGG 1200 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 TGACTGGAATACTGGGGGAAGCTGTGGCAATACCGTTCCCTTGTCTAACGGAAGTGAGGT 1260 consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 ATTGCAGGATCATTCAAGCGACTTACCTGTGGAGAGTGCTGTGAATGGAACTCGGGTTAA 1320 consensus_3509#1 ----------------------GGACGAGACAAGGGGGCTGTGAATGGAACTCGGGTTAA 38 ** * ** * *********************** consensus_3509#0 GATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTAC 1380 consensus_3509#1 GATTTTGGATATAACTGCTGTTTCACAGCTACGAGATGAGGGGCATATATCCAATTCTAC 98 ************************************************************ consensus_3509#0 TTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTAT 1440 consensus_3509#1 TTTCAAAGGTAGAGCTTCAACAGGGATTAACGATTGCTTGCACTGGTGCCTTCCTGGTAT 158 ************************************************************ consensus_3509#0 ACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGG 1500 consensus_3509#1 ACCAGATATGTGGAATGAGCTCCTCTTTGCACAGATTTAGTGCTGCACTTCAGTGAGGGG 218 ************************************************************ consensus_3509#0 ATTTTTTTTTTTTACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGAT 1560 consensus_3509#1 ATTTTTTTTTTT-ACACAATCCGAAGAGTTCCTTTGGTGTTCTGCACAGATAGCACAGAT 277 ************ *********************************************** consensus_3509#0 ATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTT 1620 consensus_3509#1 ATGTGGAATGAGCTCCTCTATACAGAAGCTGTTTTAGCGTAGCATTTAATTATGGAACTT 337 ************************************************************ consensus_3509#0 CTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACT 1680 consensus_3509#1 CTGGCCACCCATATGGAAGCAGTCGACAATTTCAAGATGATAGTATGCACCCATAAGACT 397 ************************************************************ consensus_3509#0 AGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATA 1740 consensus_3509#1 AGAGATGATGCTAGTGTAAAGTTCGGTTCAGATTATTTAGCCTTTTCTCAAGTCAAGATA 457 ************************************************************ consensus_3509#0 TGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTG 1800 consensus_3509#1 TGGAACTAGATGCTGCTACAGAGCCTTATAGAGTAGTCCCCCAGGTACATCGATTTTTTG 517 ************************************************************ consensus_3509#0 TTTTCTTTTTTTTTTTGAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATA 1860 consensus_3509#1 TTTTCTTTTTTTTT--GAGTAAAATGCTACCACAGTCCACAGTTTACCATGTGCAACATA 575 ************** ******************************************** consensus_3509#0 TATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAG 1920 consensus_3509#1 TATTTTTTAGATACACACATGCAAGTTGACCAAAGTGCTGTATGCTCTTATACTTTTAAG 635 ************************************************************ consensus_3509#0 GTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGTTGTAACATTTGAA 1980 consensus_3509#1 GTAGAATTCTTGTTTTATGCCTGTAACAACAATCTCATTTCAGATGNTGTAACATTTGAA 695 ********************************************** ************* consensus_3509#0 AAG-TTTCATGTAATCATTGTAGAGTTTATACATAGTCCAGAAGAAATATAAACATGGCA 2039 consensus_3509#1 AAGGTTTCATGTAATCATTGTAGAGNTTATACATAGTCCAGAAGAAATATAAA------- 748 *** ********************* *************************** consensus_3509#0 TCTGT 2044 consensus_3509#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||