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Oryza sativa
cluster # 351 cluster # 351       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_351#0 length = 1357 sequences # 1  
consensus_351#1 length = 930 sequences # 1  

consensusID : consensus_351#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1357
fasta sequence
                              [ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA]

[+] EMBL AK108868             [ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA]


>consensus_351#0 ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACA GACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGA CGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTA CTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCA CACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCA GAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCG TGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGC CGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTG CGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGA CGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCA CGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCC CGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAA GGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGC CCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGA GGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACAT TTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCG GGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAAC TTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGA AAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGT TCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTC CCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGT TTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTG TACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA



consensusID : consensus_351#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 930
fasta sequence
                              [CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT]

[+] EMBL AK108299             [CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT]


>consensus_351#1 CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATC CACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG GTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA CCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCA TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGA ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC TCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGG GCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCA CTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCC GCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCG ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGC CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCG CCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGG CCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCA CTACGTTAACGGATTAAACGAGATTATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_351#0      ----ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATC 56
consensus_351#1      CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATC 60
                         *************************************** ****************

consensus_351#0      CACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 116
consensus_351#1      CACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 120
                     ***** ******************************************************

consensus_351#0      CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 176
consensus_351#1      CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 180
                     ************************************************************

consensus_351#0      GCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 236
consensus_351#1      GTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 240
                     * **********************************************************

consensus_351#0      CCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCA 296
consensus_351#1      CCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCA 300
                     ******************* *********************** *********** ****

consensus_351#0      TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGA 356
consensus_351#1      TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGA 360
                     ******************************* ***** ** ******** **********

consensus_351#0      ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 416
consensus_351#1      ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 420
                     ************************************************************

consensus_351#0      TCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGG 476
consensus_351#1      TCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGG 480
                     ******* *********************** ** ***************** *******

consensus_351#0      GTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCA 536
consensus_351#1      GCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCA 540
                     * ***** ********************  * *********** ****************

consensus_351#0      CTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCC 596
consensus_351#1      CTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCC 600
                     ******* ******************** ************************** ****

consensus_351#0      GCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTG 656
consensus_351#1      GCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCG 660
                     ******************* ***** ************************ * ***** *

consensus_351#0      ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGC 716
consensus_351#1      ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGC 720
                     ************************************************** *********

consensus_351#0      CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCG 776
consensus_351#1      CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCG 780
                     ************************************* *********** ****** ***

consensus_351#0      CCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGG 836
consensus_351#1      CCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGG 840
                     ************* ** ***************** *************  **********

consensus_351#0      CCGAGGCCGC----GCCTGC--AGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGC 890
consensus_351#1      CCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCA-TGTACAAGCAGGGCTGC 899
                     *** * ****    * ** *   ********  * *   **  * ** * **********

consensus_351#0      TGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCA 950
consensus_351#1      ----ACTACGTTAACGGA---TTAAACGAGATTATTTT---------------------- 930
                         *     ** *****   *  ********  ****                      

consensus_351#0      TGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGG 1010
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      TCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTC 1070
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      GTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTG 1130
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      ACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTT 1190
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      GCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCT 1250
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      TCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTT 1310
consensus_351#1      ------------------------------------------------------------
                                                                                 

consensus_351#0      ATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA 1357
consensus_351#1      -----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)