These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1357 fasta sequence [ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA] [+] EMBL AK108868 [ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATCCACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGGGTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCACTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCCGCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCGCCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGGCCGAGGCCGCGCCTGCAGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGCTGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCATGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGGTCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTCGTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTGACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTTGCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCTTCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTTATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA] consensusID : consensus_351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 930 fasta sequence [CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT] [+] EMBL AK108299 [CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATCCACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTGCTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGGGTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCACCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGAACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGGGCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCCGCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCGACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCGCCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGGCCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCATGTACAAGCAGGGCTGCACTACGTTAACGGATTAAACGAGATTATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_351#0 ----ACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCGGTTCAGACTACTAATC 56 consensus_351#1 CTACACGACAACGAAGGTTCGCATATCTGAACGCTCGTCCCGCCGTTCAGACTACTAATC 60 *************************************** **************** consensus_351#0 CACAGACCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 116 consensus_351#1 CACAGCCCGACACAATGGCCACCGCTCAGGGTCAGATCTCCAAGCGCAGGAAGTTCGTTG 120 ***** ****************************************************** consensus_351#0 CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 176 consensus_351#1 CTGACGGTGTTTTCTACGCCGAGCTCAACGAGTTCTTCCAGCGCGAGCTTGCTGAGGAGG 180 ************************************************************ consensus_351#0 GCTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 236 consensus_351#1 GTTACTCCGGCGTCGAGGTCCGCGTCACGCCCACCGTCACCGACATCATCATCCGCGCCA 240 * ********************************************************** consensus_351#0 CCCACACACAAGACGTCCTTGGCGAGCAGGGCCGCCGCATCCGCGAGCTCACCTCCCTCA 296 consensus_351#1 CCCACACACAAGACGTCCTCGGCGAGCAGGGCCGCCGCATCCGTGAGCTCACCTCGCTCA 300 ******************* *********************** *********** **** consensus_351#0 TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTCTCCCTGTACGCCGCAAAGGTCCAGA 356 consensus_351#1 TCCAGAAGCGCTTCAAGTTCCCCGAGAACTCTGTCTCGCTCTACGCCGCCAAGGTCCAGA 360 ******************************* ***** ** ******** ********** consensus_351#0 ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 416 consensus_351#1 ACCGTGGTCTCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC 420 ************************************************************ consensus_351#0 TCGCCGTCCGAAGGGCGTGCTATGGTGTCCTCCGTTTCATCATGGAGTCTGGTGCCAAGG 476 consensus_351#1 TCGCCGTGCGAAGGGCGTGCTATGGTGTCCTGCGGTTCATCATGGAGTCTGGCGCCAAGG 480 ******* *********************** ** ***************** ******* consensus_351#0 GTTGCGAGGTCGTTGTCTCCGGAAAGCTTAGGGCTGCCCGTGCCAAGAGCATGAAGTTCA 536 consensus_351#1 GCTGCGAAGTCGTTGTCTCCGGAAAGCTCCGTGCTGCCCGTGCGAAGAGCATGAAGTTCA 540 * ***** ******************** * *********** **************** consensus_351#0 CTGACGGCTTCATGATCCACTCCGGTCAACCCGCCAAGGACTTCATCGACGAGGCTACCC 596 consensus_351#1 CTGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGACTTCATCGACGAGGCCACCC 600 ******* ******************** ************************** **** consensus_351#0 GCCACGTCCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTCAAGATCATGAGGGGCGCTG 656 consensus_351#1 GCCACGTCCTCCTCCGCCAAGGTGTGCTCGGTATCAAGGTCAAGATCATGCGTGGCGCCG 660 ******************* ***** ************************ * ***** * consensus_351#0 ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCGTCATCGAGC 716 consensus_351#1 ACCCCGAGGGCAAGGCCGGCCCCGCCAAGTCGCTCCCCGACTCGGTCACCATCATCGAGC 720 ************************************************** ********* consensus_351#0 CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAAGACTACGGCGCCAAGGCGCTCG 776 consensus_351#1 CCAAGGAGGAGCAGCCCGTCGTCCAGCCCATGTCGCAGGACTACGGCGCAAAGGCGATCG 780 ************************************* *********** ****** *** consensus_351#0 CCGCCCAGCAGGCTGCGGAGCAGCAGCGGCAGGCGGAGCAGGGCCAGGGAGAGGGCGAGG 836 consensus_351#1 CCGCCCAGCAGGCCGCCGAGCAGCAGCGGCAGGCCGAGCAGGGCCAGGCTGAGGGCGAGG 840 ************* ** ***************** ************* ********** consensus_351#0 CCGAGGCCGC----GCCTGC--AGAGGAGTAAGCACTGTGCGCTTTAGAGGCAGGGCTGC 890 consensus_351#1 CCGCGCCCGCCGAGGGCTACTCGGAGGAGTAGACCCGCCGCA-TGTACAAGCAGGGCTGC 899 *** * **** * ** * ******** * * ** * ** * ********** consensus_351#0 TGGCAAACATTTTACGGACATTCTAACGAGATCTTTTTTGTCTTTTCCATTCACATCGCA 950 consensus_351#1 ----ACTACGTTAACGGA---TTAAACGAGATTATTTT---------------------- 930 * ** ***** * ******** **** consensus_351#0 TGCGGGCGCGGGGGTTGCGGAAATCGTCGACGTGACTGCGACGCCCTGCCGATCCGTTGG 1010 consensus_351#1 ------------------------------------------------------------ consensus_351#0 TCAAAAAAACTTGCTGGGTCTGGGTCCGGCCTTGTCTCGCATGAGTATCATGAACCCTTC 1070 consensus_351#1 ------------------------------------------------------------ consensus_351#0 GTACGTGAGAAAATGTGAACACGAGAATGCCGCGTACTCTTTTCCCTCTGTCGGTTCTTG 1130 consensus_351#1 ------------------------------------------------------------ consensus_351#0 ACTCTCTGGTTCCGGTGTGCGTCCATCTGTCTGACTCGTCGGTTTCTTTTCTTCTCTCTT 1190 consensus_351#1 ------------------------------------------------------------ consensus_351#0 GCTTGCATTCCCCCTTGCGACTCGGATGGCGTATGGCAGAATGTGTGGGGCAAAAAAGCT 1250 consensus_351#1 ------------------------------------------------------------ consensus_351#0 TCTCCGTGGTTTTTCGTGTGTCATTATGATCATCATGCAGGGAGGTTCAATCGGAGTCTT 1310 consensus_351#1 ------------------------------------------------------------ consensus_351#0 ATGTGCTGTGTACTTTTGGACACCCCCCCAATGCAAAAAGGAATACA 1357 consensus_351#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||