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Oryza sativa
cluster # 3514 cluster # 3514       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3514#0 length = 1259 sequences # 1  
consensus_3514#1 length = 246 sequences # 1  

consensusID : consensus_3514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1259
fasta sequence
                              [GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT]

[+] EMBL AK110615             [GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT]


>consensus_3514#0 GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGA TGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAG GAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCAT GATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCT TTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGAT AGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGA CTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGA GTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACT CTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGA GGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGG CCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTC CGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAA GAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACAT CTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGG TGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGT GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA CCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA GGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGG TATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTA GTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCC AATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT



consensusID : consensus_3514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence
                              [AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC]

[+] EMBL CB483497             [AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC]


>consensus_3514#1 AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGT GGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATC CTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCG ATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGAT GTTGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3514#0      GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGA 60
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      TGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAG 120
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCAT 180
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCT 240
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      TTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGAT 300
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      AGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGA 360
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      CTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGA 420
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACT 480
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      CTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGA 540
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGG 600
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      CCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTC 660
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      CGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAA 720
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACAT 780
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      CTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGG 840
consensus_3514#1      -------------------AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCC 41
                                          ** *    ** *    *   *  * *    **  * **  

consensus_3514#0      TGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGT 900
consensus_3514#1      TGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGT 101
                      **  ******************************************* ************

consensus_3514#0      GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 960
consensus_3514#1      GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 161
                      ************************************************************

consensus_3514#0      CCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 1020
consensus_3514#1      CCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 221
                      ******* ****************************************************

consensus_3514#0      GGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGG 1080
consensus_3514#1      GGTAACCGTCCTGCAGGATGTTGTC----------------------------------- 246
                      *** *********************                                   

consensus_3514#0      TATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTA 1140
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      GTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCC 1200
consensus_3514#1      ------------------------------------------------------------
                                                                                  

consensus_3514#0      AATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT 1259
consensus_3514#1      -----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)