These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1259 fasta sequence [GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT] [+] EMBL AK110615 [GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT] consensusID : consensus_3514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC] [+] EMBL CB483497 [AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3514#0 GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGA 60 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 TGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAG 120 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCAT 180 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCT 240 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 TTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGAT 300 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 AGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGA 360 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 CTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGA 420 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACT 480 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 CTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGA 540 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGG 600 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 CCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTC 660 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 CGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAA 720 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACAT 780 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 CTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGG 840 consensus_3514#1 -------------------AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCC 41 ** * ** * * * * * ** * ** consensus_3514#0 TGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGT 900 consensus_3514#1 TGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGT 101 ** ******************************************* ************ consensus_3514#0 GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 960 consensus_3514#1 GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 161 ************************************************************ consensus_3514#0 CCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 1020 consensus_3514#1 CCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 221 ******* **************************************************** consensus_3514#0 GGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGG 1080 consensus_3514#1 GGTAACCGTCCTGCAGGATGTTGTC----------------------------------- 246 *** ********************* consensus_3514#0 TATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTA 1140 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 GTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCC 1200 consensus_3514#1 ------------------------------------------------------------ consensus_3514#0 AATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT 1259 consensus_3514#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||