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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1259 fasta sequence
[GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT]
[+] EMBL AK110615 [GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGATGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAGGAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCATGATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCTTTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGATAGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGACTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGAGTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACTCTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGAGGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGGCCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTCCGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAAGAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACATCTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGGTGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGGTATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTAGTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCCAATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT]
consensusID : consensus_3514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC]
[+] EMBL CB483497 [AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCCTGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGTGCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAACCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAAGGTAACCGTCCTGCAGGATGTTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3514#0 GCTTGAACTTAGAGGTGGGTTGCTTAGCCTGGTTTTACAAGAATCTAAACCAGCAATGGA 60
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 TGGAGGAGGCGTCGATGGCTATGAGATGGAGATGGTGAGGAACAGGAAGGTGGTGCTAAG 120
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GAGGTACGTGACGGCTGGGTACCCTACAGTAGATGATATGGAGGTGGTATCCTCCACCAT 180
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GATGCCACGCGTGCCTCTTGGAACAATGGCACCAGCGGTGATGGTGAAGAACATCTACCT 240
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 TTCATGCGACCCGTGGATGCGCGGTCGTATGACTAAGCACGACGATGCTACCGCGGAGAT 300
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 AGCCGAAGACTTCGTGTTAGGAGAGGCCATGGTTAATTTCGGTGTGAGCAAGGTGGTCGA 360
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 CTCAACGCACCCGGTGTTCGCTGCTGGCGACCTCGTGTGGGGACTGTGTGGTTGGGAGGA 420
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GTACAGCCTCATCACCCAACCGGAGACACTGCACAAGATCAACCATCCTGATCTACCACT 480
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 CTCCTACTACACCGGTGTTCTCGGTGTGACTGGTCTAACAGCATATGCCGCATTCTTTGA 540
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GGTCGGCAAGCCCAAGAAAGGAGAGACCGTCTTTGTGTCGGCGGCATCTGGTGCTGTCGG 600
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 CCAGATTGTTGGGCAGCTTGCAAAGATTGCCGGCTGCTATGTGGTTGGAAGCGCTGGCTC 660
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 CGACGAGAAGGTCACCCTTCTCAAGACCAAGTTTGGCTTTCACGATGCATTCAACTACAA 720
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GAAAGAGAGCAATGATCTTACCGGTGCTCTCCGGCGGTGCTTCCCAGATGGAATAGACAT 780
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 CTACTTTGACAATGTCGGCGGTGCGACGCTGGATGCGGCGCTGGTCAACATGCGGCGTGG 840
consensus_3514#1 -------------------AGTCCTGACCTAGTGATGAGTCCTGACCGAGTGATGAGTCC 41
** * ** * * * * * ** * **
consensus_3514#0 TGGTCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGAGCCCGAGGGGGT 900
consensus_3514#1 TGACCGAGTGGTGGTGTGTGGGATGATTTCACAGTACAACCTGCAGGTGCCCGAGGGGGT 101
** ******************************************* ************
consensus_3514#0 GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 960
consensus_3514#1 GCACAACGTGATACAGATCCTATCCAAGACCATCCGGGTGGAGGGATTTGCCGTATTCAA 161
************************************************************
consensus_3514#0 CCACTTCGGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 1020
consensus_3514#1 CCACTTCAGCTTATACCCGATGTTTGAGGATGAGATGGCTAGGTACCTAAAGGAAGGTAA 221
******* ****************************************************
consensus_3514#0 GGTGACCGTCCTGCAGGATGTTGTCGAGGGCATCGAGAAGGCATCGGAGGCTCTCATTGG 1080
consensus_3514#1 GGTAACCGTCCTGCAGGATGTTGTC----------------------------------- 246
*** *********************
consensus_3514#0 TATGTTTTCTGGGAGGAATGTGGGCAAGTTGTTGGTTGCTGTTGCAGATGAATGACTCTA 1140
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 GTTAATTAATAATAGGCAGTTATAGTACTGTTATAGAATAAGATGCAGGACAATATTTCC 1200
consensus_3514#1 ------------------------------------------------------------
consensus_3514#0 AATTCAGTTCATATATAGCAAATGTTGTAAACCCACTTTATACTCATAATCTTATATAT 1259
consensus_3514#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||